Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005737A_C01 KMC005737A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565885.1| expressed protein; protein id: At2g38270.1, sup... 226 2e-58
gb|AAN60257.1| unknown [Arabidopsis thaliana] 223 1e-57
gb|AAM64346.1| unknown [Arabidopsis thaliana] 222 2e-57
ref|NP_681664.1| ORF_ID:tll0874~hypothetical protein [Thermosyne... 109 3e-23
gb|AAO19647.1| CAXIP1 protein [Arabidopsis thaliana] 108 4e-23
>ref|NP_565885.1| expressed protein; protein id: At2g38270.1, supported by cDNA:
23238. [Arabidopsis thaliana] gi|7485588|pir||T01258
hypothetical protein At2g38270 [imported] - Arabidopsis
thaliana gi|3335374|gb|AAC27175.1| expressed protein
[Arabidopsis thaliana] gi|26449971|dbj|BAC42106.1|
unknown protein [Arabidopsis thaliana]
gi|27752307|gb|AAO19648.1| CAXIP1-like protein
[Arabidopsis thaliana] gi|28827326|gb|AAO50507.1|
unknown protein [Arabidopsis thaliana]
Length = 293
Score = 226 bits (575), Expect = 2e-58
Identities = 104/132 (78%), Positives = 124/132 (93%)
Frame = -1
Query: 580 GNESGTTTWVRQQPKKKPDLRLTPGRHVQLTVPLEDLIDKLVKDNKVVAFIKGSRSAPMC 401
GN+SG T+V+Q P+KK D+RLTPGRHV+LTVPLE+LID+LVK++KVVAFIKGSRSAP C
Sbjct: 160 GNKSGNNTFVKQTPRKKSDIRLTPGRHVELTVPLEELIDRLVKESKVVAFIKGSRSAPQC 219
Query: 400 GFSQRVIGILESEGVDYESVNVLDEDYNYGLRETLKKYSNWPTFPQIFVDGELVGGCDIL 221
GFSQRV+GILES+GVDYE+V+VLD++YN+GLRETLK YSNWPTFPQIFV GELVGGCDIL
Sbjct: 220 GFSQRVVGILESQGVDYETVDVLDDEYNHGLRETLKNYSNWPTFPQIFVKGELVGGCDIL 279
Query: 220 TSMYEKGEVASV 185
TSMYE GE+A++
Sbjct: 280 TSMYENGELANI 291
>gb|AAN60257.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 223 bits (568), Expect = 1e-57
Identities = 103/132 (78%), Positives = 123/132 (93%)
Frame = -1
Query: 580 GNESGTTTWVRQQPKKKPDLRLTPGRHVQLTVPLEDLIDKLVKDNKVVAFIKGSRSAPMC 401
GN+SG T+V+Q P+KK D+RLTPGRHV+LTVPL +LID+LVK++KVVAFIKGSRSAP C
Sbjct: 160 GNKSGNNTFVKQTPRKKSDIRLTPGRHVELTVPLGELIDRLVKESKVVAFIKGSRSAPQC 219
Query: 400 GFSQRVIGILESEGVDYESVNVLDEDYNYGLRETLKKYSNWPTFPQIFVDGELVGGCDIL 221
GFSQRV+GILES+GVDYE+V+VLD++YN+GLRETLK YSNWPTFPQIFV GELVGGCDIL
Sbjct: 220 GFSQRVVGILESQGVDYETVDVLDDEYNHGLRETLKNYSNWPTFPQIFVKGELVGGCDIL 279
Query: 220 TSMYEKGEVASV 185
TSMYE GE+A++
Sbjct: 280 TSMYENGELANI 291
>gb|AAM64346.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 222 bits (566), Expect = 2e-57
Identities = 103/132 (78%), Positives = 123/132 (93%)
Frame = -1
Query: 580 GNESGTTTWVRQQPKKKPDLRLTPGRHVQLTVPLEDLIDKLVKDNKVVAFIKGSRSAPMC 401
GN+SG T+V+Q P+KK D+RLTPGRHV+LTV LE+LID+LVK++KVVAFIKGSRSAP C
Sbjct: 160 GNKSGNNTFVKQTPRKKSDIRLTPGRHVELTVXLEELIDRLVKESKVVAFIKGSRSAPQC 219
Query: 400 GFSQRVIGILESEGVDYESVNVLDEDYNYGLRETLKKYSNWPTFPQIFVDGELVGGCDIL 221
GFSQRV+GILES+GVDYE+V+VLD++YN+GLRETLK YSNWPTFPQIFV GELVGGCDIL
Sbjct: 220 GFSQRVVGILESQGVDYETVDVLDDEYNHGLRETLKNYSNWPTFPQIFVKGELVGGCDIL 279
Query: 220 TSMYEKGEVASV 185
TSMYE GE+A++
Sbjct: 280 TSMYENGELANI 291
>ref|NP_681664.1| ORF_ID:tll0874~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294596|dbj|BAC08426.1|
ORF_ID:tll0874~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 121
Score = 109 bits (272), Expect = 3e-23
Identities = 52/121 (42%), Positives = 78/121 (63%)
Frame = -1
Query: 556 WVRQQPKKKPDLRLTPGRHVQLTVPLEDLIDKLVKDNKVVAFIKGSRSAPMCGFSQRVIG 377
W Q+ K+ +TP H + ID LVK NK++ F+KGS+ P CGFS +
Sbjct: 6 WSTQEEKRT----MTPELHAK--------IDNLVKSNKIIVFMKGSKLMPQCGFSNNAVQ 53
Query: 376 ILESEGVDYESVNVLDEDYNYGLRETLKKYSNWPTFPQIFVDGELVGGCDILTSMYEKGE 197
IL + GV YE+V+VL++ + +R+ +K+YSNWPT PQ+F++GE +GG DIL +Y+ GE
Sbjct: 54 ILNALGVPYETVDVLED---FEIRQGIKEYSNWPTIPQVFINGEFIGGSDILIELYQSGE 110
Query: 196 V 194
+
Sbjct: 111 L 111
>gb|AAO19647.1| CAXIP1 protein [Arabidopsis thaliana]
Length = 173
Score = 108 bits (271), Expect = 4e-23
Identities = 52/106 (49%), Positives = 72/106 (67%)
Frame = -1
Query: 493 LTVPLEDLIDKLVKDNKVVAFIKGSRSAPMCGFSQRVIGILESEGVDYESVNVLDEDYNY 314
LT L+D ++KLV KVV F+KG+R PMCGFS V+ IL++ V +E VN+L+ N
Sbjct: 67 LTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILE---NE 123
Query: 313 GLRETLKKYSNWPTFPQIFVDGELVGGCDILTSMYEKGEVASVFKK 176
LR+ LK+YSNWPTFPQ+++ GE GGCDI ++ GE+ +K
Sbjct: 124 MLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEK 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,615,252
Number of Sequences: 1393205
Number of extensions: 11112888
Number of successful extensions: 28083
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 27063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27936
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
