Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005736A_C01 KMC005736A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69854.1| putative thioredoxin m2 [Pisum sativum] 152 3e-36
sp|P48384|THIM_PEA Thioredoxin M-type, chloroplast precursor (TR... 149 4e-35
gb|AAC49358.1| thioredoxin m 149 4e-35
ref|NP_188155.1| thioredoxin m4; protein id: At3g15360.1, suppor... 142 5e-33
gb|AAF15951.1|AF095752_1 thioredoxin m4 [Arabidopsis thaliana] 140 2e-32
>emb|CAC69854.1| putative thioredoxin m2 [Pisum sativum]
Length = 180
Score = 152 bits (385), Expect = 3e-36
Identities = 66/82 (80%), Positives = 77/82 (93%)
Frame = -1
Query: 641 EFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFRDGE 462
EFWAPWCGPCRM+HPIIDELAK+Y GK KCYKLNTDESPSTATRYGIRSIPTV+ F+DGE
Sbjct: 99 EFWAPWCGPCRMMHPIIDELAKEYVGKFKCYKLNTDESPSTATRYGIRSIPTVIFFKDGE 158
Query: 461 KKDTVIGAVPKSTLTSSIEKFV 396
KKD +IG+VPK++L ++IEKF+
Sbjct: 159 KKDAIIGSVPKASLITTIEKFL 180
>sp|P48384|THIM_PEA Thioredoxin M-type, chloroplast precursor (TRX-M)
gi|481594|pir||S38909 thioredoxin m precursor - garden
pea gi|431957|emb|CAA53900.1| thioredoxin m [Pisum
sativum]
Length = 172
Score = 149 bits (375), Expect = 4e-35
Identities = 63/82 (76%), Positives = 78/82 (94%)
Frame = -1
Query: 641 EFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFRDGE 462
+FWAPWCGPCRMI PIIDELAK+YAGK+KCYKLNTDESP+TAT+YGIRSIPTV+ F++GE
Sbjct: 91 DFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGE 150
Query: 461 KKDTVIGAVPKSTLTSSIEKFV 396
+KD+VIGAVPK+TL+ +EK++
Sbjct: 151 RKDSVIGAVPKATLSEKVEKYI 172
>gb|AAC49358.1| thioredoxin m
Length = 172
Score = 149 bits (375), Expect = 4e-35
Identities = 63/82 (76%), Positives = 78/82 (94%)
Frame = -1
Query: 641 EFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFRDGE 462
+FWAPWCGPCRMI PIIDELAK+YAGK+KCYKLNTDESP+TAT+YGIRSIPTV+ F++GE
Sbjct: 91 DFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGE 150
Query: 461 KKDTVIGAVPKSTLTSSIEKFV 396
+KD+VIGAVPK+TL+ +EK++
Sbjct: 151 RKDSVIGAVPKATLSEKVEKYI 172
>ref|NP_188155.1| thioredoxin m4; protein id: At3g15360.1, supported by cDNA: 42151.,
supported by cDNA: gi_14030704, supported by cDNA:
gi_16974518, supported by cDNA: gi_6539613 [Arabidopsis
thaliana] gi|27735268|sp|Q9SEU6|THM4_ARATH Thioredoxin
M-type 4, chloroplast precursor (TRX-M4)
gi|7021721|gb|AAF35402.1| thioredoxin m4 [Arabidopsis
thaliana] gi|14030705|gb|AAK53027.1|AF375443_1
AT3g15360/MJK13_2 [Arabidopsis thaliana]
gi|15795101|dbj|BAB02365.1| thioredoxin m4 [Arabidopsis
thaliana] gi|16974519|gb|AAL31169.1| AT3g15360/MJK13_2
[Arabidopsis thaliana] gi|21593734|gb|AAM65701.1|
thioredoxin m4 [Arabidopsis thaliana]
Length = 193
Score = 142 bits (357), Expect = 5e-33
Identities = 60/82 (73%), Positives = 74/82 (90%)
Frame = -1
Query: 641 EFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFRDGE 462
EFWAPWCGPCRMIHPI+D+LAK +AGK K YK+NTDESP+TA RYGIRS+PTV+IF+ GE
Sbjct: 110 EFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGE 169
Query: 461 KKDTVIGAVPKSTLTSSIEKFV 396
KKD++IGAVP+ TL +IE+F+
Sbjct: 170 KKDSIIGAVPRETLEKTIERFL 191
>gb|AAF15951.1|AF095752_1 thioredoxin m4 [Arabidopsis thaliana]
Length = 193
Score = 140 bits (352), Expect = 2e-32
Identities = 59/82 (71%), Positives = 73/82 (88%)
Frame = -1
Query: 641 EFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFRDGE 462
EFWAPWCGPCRMIHPI+D+LAK +AGK K YK+NTDESP+T RYGIRS+PTV+IF+ GE
Sbjct: 110 EFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTPNRYGIRSVPTVIIFKGGE 169
Query: 461 KKDTVIGAVPKSTLTSSIEKFV 396
KKD++IGAVP+ TL +IE+F+
Sbjct: 170 KKDSIIGAVPRETLEKTIERFL 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,391,696
Number of Sequences: 1393205
Number of extensions: 10890261
Number of successful extensions: 24582
Number of sequences better than 10.0: 1123
Number of HSP's better than 10.0 without gapping: 23251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24170
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
