Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005735A_C01 KMC005735A_c01
(413 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_248380.1| glutamyl-tRNA synthetase (gltX) [Methanococcus ... 32 1.4
gb|EAA24852.1| hypothetical protein [Fusobacterium nucleatum sub... 31 3.2
gb|AAB01690.1| Mhc class II beta 31 4.1
gb|AAM08769.2| hypothetical protein [Dictyostelium discoideum] 30 5.4
dbj|BAC37985.1| unnamed protein product [Mus musculus] 30 5.4
>ref|NP_248380.1| glutamyl-tRNA synthetase (gltX) [Methanococcus jannaschii]
gi|2500977|sp|Q58772|SYE_METJA Glutamyl-tRNA synthetase
(Glutamate--tRNA ligase) (GluRS) gi|2127936|pir||H64471
glutamate-tRNA ligase (EC 6.1.1.17) - Methanococcus
jannaschii gi|1592022|gb|AAB99384.1| glutamyl-tRNA
synthetase (gltX) [Methanococcus jannaschii]
Length = 553
Score = 32.3 bits (72), Expect = 1.4
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Frame = +1
Query: 160 DRSIEHNLQLYFQLL---LPNIVEERRQSIYKSKNKSIRQRKKMEISSFPSPSSTAKMTA 330
DR+IE NL+L+ ++L L N+ + I K KN SIR + P P + K
Sbjct: 207 DRAIEDNLELWEKMLNGELENVAVRLKTDI-KHKNPSIRDFPIFRVEKTPHPRTGDKYCV 265
Query: 331 LRSANWQVFFFNHL 372
N+ V +HL
Sbjct: 266 YPLMNFSVPVDDHL 279
>gb|EAA24852.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 252
Score = 31.2 bits (69), Expect = 3.2
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +1
Query: 136 LAKEPLSLDRSIEHNLQLYFQLLLPNIVEERRQSIYKSKNKSIRQRKKMEISSFPSPSST 315
L KE +L L+ + +L I+EE + +YK + K I +KM + +
Sbjct: 136 LQKELENLKEKYNLPLEERYSFILNKIIEEEKLYLYKDEEKFIVNAEKMAMKNL----EI 191
Query: 316 AKMTALRSANWQVFFFNHLSSFE 384
K ++ +F+ N+LS E
Sbjct: 192 FKDMNFEEIDFYIFYINYLSKKE 214
>gb|AAB01690.1| Mhc class II beta
Length = 149
Score = 30.8 bits (68), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 103 QLGLTNGRIW----VLAKEPLSLDRSIEHNLQLYFQLLLPNIVE 222
+LGL N W L +E L+R +HN ++Y++ +L VE
Sbjct: 30 ELGLKNAEAWNKGPQLGQEQGELERFCKHNAEIYYRAILDKTVE 73
>gb|AAM08769.2| hypothetical protein [Dictyostelium discoideum]
Length = 196
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +1
Query: 160 DRSIEHNLQLYFQLLLPNIVEERRQSIYKSKNKSIRQRKKME 285
D S E+N PN+ EE +Q I++ K K +Q+KK++
Sbjct: 131 DNSFENN---------PNLTEEEKQKIFQEKVKKQQQKKKLK 163
>dbj|BAC37985.1| unnamed protein product [Mus musculus]
Length = 255
Score = 30.4 bits (67), Expect = 5.4
Identities = 25/69 (36%), Positives = 35/69 (50%)
Frame = -1
Query: 407 G*LAPPTISKDDK*LKKKTCQFADLRAVILAVEEGEGNELISIFFLCLMLLFLLL*IDCL 228
G LAP S + K T +F +LRA + + + N L FFL +L LLL +
Sbjct: 94 GELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKANHL---FFLVYLLHILLLDVAAW 150
Query: 227 LSSTIFGSS 201
L+ IFG+S
Sbjct: 151 LTLWIFGTS 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,034,321
Number of Sequences: 1393205
Number of extensions: 7366781
Number of successful extensions: 17996
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17973
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
