Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005734A_C01 KMC005734A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) gi|1362041|... 280 7e-75
gb|AAF26742.1|AF220539_1 40s ribosomal protein S23 [Euphorbia es... 277 6e-74
dbj|BAB92932.1| 40S ribosomal protein S23 [Oryza sativa (japonic... 274 6e-73
ref|NP_195916.1| putative protein; protein id: At5g02960.1, supp... 267 6e-71
ref|NP_566351.1| putative 40S ribosomal protein S23; protein id:... 258 3e-68
>sp|P46297|RS23_FRAAN 40S RIBOSOMAL PROTEIN S23 (S12) gi|1362041|pir||S56673 ribosomal
protein S23.e, cytosolic (clone RJ3) - garden strawberry
gi|643074|gb|AAA79921.1| putative 40S ribosomal protein
s12
Length = 142
Score = 280 bits (717), Expect = 7e-75
Identities = 138/139 (99%), Positives = 139/139 (99%)
Frame = -3
Query: 567 TRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 388
TRGMGAARKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS
Sbjct: 4 TRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 63
Query: 387 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 208
AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 207 VSGVSLLALFKEKKEKPRS 151
VSGVSLLALFKEKKEKPRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
>gb|AAF26742.1|AF220539_1 40s ribosomal protein S23 [Euphorbia esula]
Length = 142
Score = 277 bits (709), Expect = 6e-74
Identities = 137/139 (98%), Positives = 137/139 (98%)
Frame = -3
Query: 567 TRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 388
T GMGAARKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS
Sbjct: 4 THGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 63
Query: 387 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 208
AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 207 VSGVSLLALFKEKKEKPRS 151
VSGVSLLALFKEKKEKPRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
>dbj|BAB92932.1| 40S ribosomal protein S23 [Oryza sativa (japonica cultivar-group)]
gi|20805267|dbj|BAB92933.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
gi|21671347|dbj|BAC02683.1| 40S ribosomal protein [Oryza
sativa (japonica cultivar-group)]
gi|21671348|dbj|BAC02684.1| 40S ribosomal protein [Oryza
sativa (japonica cultivar-group)]
gi|28876025|gb|AAO60034.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
gi|29124115|gb|AAO65856.1| 40S ribosomal protein S23
[Oryza sativa (japonica cultivar-group)]
Length = 142
Score = 274 bits (700), Expect = 6e-73
Identities = 133/139 (95%), Positives = 137/139 (97%)
Frame = -3
Query: 567 TRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 388
TRGMGA RKLK+HRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS
Sbjct: 4 TRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 63
Query: 387 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 208
AIRKCARVQL+KNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 207 VSGVSLLALFKEKKEKPRS 151
VSGVSLLALFKEKKEKPRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
>ref|NP_195916.1| putative protein; protein id: At5g02960.1, supported by cDNA:
gi_14532717, supported by cDNA: gi_15450458 [Arabidopsis
thaliana] gi|27735238|sp|P49201|R23B_ARATH 40S ribosomal
protein S23-2 (S12) gi|11276598|pir||T48317 hypothetical
protein F9G14.270 - Arabidopsis thaliana
gi|7413571|emb|CAB86050.1| putative protein [Arabidopsis
thaliana] gi|14532718|gb|AAK64160.1| unknown protein
[Arabidopsis thaliana] gi|15450459|gb|AAK96523.1|
AT5g02960/F9G14_270 [Arabidopsis thaliana]
gi|21281137|gb|AAM44979.1| unknown protein [Arabidopsis
thaliana]
Length = 142
Score = 267 bits (683), Expect = 6e-71
Identities = 133/139 (95%), Positives = 133/139 (95%)
Frame = -3
Query: 567 TRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 388
TRGMGA RKLK R QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS
Sbjct: 4 TRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 63
Query: 387 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 208
AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 207 VSGVSLLALFKEKKEKPRS 151
VSGVSLLALFKEKKEKPRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
>ref|NP_566351.1| putative 40S ribosomal protein S23; protein id: At3g09680.1,
supported by cDNA: 109271. [Arabidopsis thaliana]
gi|27734450|sp|Q9SF35|R23A_ARATH 40S ribosomal protein
S23-1 (S12) gi|21536723|gb|AAM61055.1| putative 40S
ribosomal protein S23 [Arabidopsis thaliana]
Length = 142
Score = 258 bits (660), Expect = 3e-68
Identities = 130/139 (93%), Positives = 131/139 (93%)
Frame = -3
Query: 567 TRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNS 388
TRGMGA RKLK R QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNS
Sbjct: 4 TRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNS 63
Query: 387 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 208
AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
Sbjct: 64 AIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 123
Query: 207 VSGVSLLALFKEKKEKPRS 151
VSGVSLLALFKEKKEKPRS
Sbjct: 124 VSGVSLLALFKEKKEKPRS 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,573,476
Number of Sequences: 1393205
Number of extensions: 10734624
Number of successful extensions: 33465
Number of sequences better than 10.0: 364
Number of HSP's better than 10.0 without gapping: 32362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33156
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
