Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005733A_C01 KMC005733A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567300.1| coded for by A. thaliana cDNA Z18000; protein i... 181 4e-45
gb|AAM18494.1|AF494368_1 short-chain alcohol dehydrogenase [Arab... 129 2e-29
dbj|BAB18775.1| NADPH-dependent retinol dehydrogenase/reductase ... 123 1e-27
ref|NP_066284.1| peroxisomal short-chain alcohol dehydrogenase; ... 123 1e-27
dbj|BAA91953.1| unnamed protein product [Homo sapiens] 123 1e-27
>ref|NP_567300.1| coded for by A. thaliana cDNA Z18000; protein id: At4g05530.1,
supported by cDNA: 38543., supported by cDNA:
gi_14334865, supported by cDNA: gi_21281152 [Arabidopsis
thaliana] gi|25283072|pir||E85069 hypothetical protein
AT4g05530 [imported] - Arabidopsis thaliana
gi|5732060|gb|AAD48959.1|AF147263_1 contains similarity
to Pfam families PF00106 (short chain dehydrogenase;
score=151.7, E=1.3e-41, N=1) and PF00678 (Short chain
dehydrogenase/reductase C-terminus; score=48.9,
E=1.1e-10, N=1) [Arabidopsis thaliana]
gi|7267313|emb|CAB81095.1| contains similarity to Pfam
families PF00106 (short chain dehydrogenase,
score=151.7, E=1.3e-41, N=1) and PF00678 (Short chain
dehydrogenase/reductase C-terminus, score=48.9,
E=1.1e-10, N=1), coded for by A. thaliana cDNA T21348,
coded for by A. thaliana cDNA H36166, coded for by A.
thaliana cDNA T21872, coded for by A. thaliana cDNA
AA712313, coded for by A. thaliana cDNA AI100613, coded
for by A. thaliana cDNA Z47605, coded for by A. thaliana
cDNA Z18000~strong similarity to~Contains Short-chain
dehydro> gi|14334866|gb|AAK59611.1| unknown protein
[Arabidopsis thaliana] gi|21281153|gb|AAM44948.1|
unknown protein [Arabidopsis thaliana]
gi|21593394|gb|AAM65343.1| putative tropinone reductase
[Arabidopsis thaliana]
Length = 254
Score = 181 bits (460), Expect = 4e-45
Identities = 91/120 (75%), Positives = 107/120 (88%)
Frame = -1
Query: 562 MQKGSSVVIISSIAGYNPPPAMAMYGVTKTALLGLTKALAGEMAPNTRVNCVAPGFVPTN 383
++KGSSV+ I+SIAG++P AMAMYGVTKTALLGLTKALA EMAP+TRVN VAPGFVPT+
Sbjct: 135 LEKGSSVIFITSIAGFSPQGAMAMYGVTKTALLGLTKALAAEMAPDTRVNAVAPGFVPTH 194
Query: 382 FASFITSNDAMRQELEGKTILGRLGTTEDMAAATAFLASEDASYITGETLVVSGGMPSRL 203
FASFIT + +R+ +E KT+L RLGTT DMAAA AFLAS+D+SYITGETLVV+GGMPSRL
Sbjct: 195 FASFITGSSEVREGIEEKTLLNRLGTTGDMAAAAAFLASDDSSYITGETLVVAGGMPSRL 254
>gb|AAM18494.1|AF494368_1 short-chain alcohol dehydrogenase [Arabidopsis lyrata subsp.
petraea]
Length = 178
Score = 129 bits (325), Expect = 2e-29
Identities = 64/89 (71%), Positives = 76/89 (84%)
Frame = -1
Query: 562 MQKGSSVVIISSIAGYNPPPAMAMYGVTKTALLGLTKALAGEMAPNTRVNCVAPGFVPTN 383
++KGSSV+ I+SIAG+ P AMAMYGVTKTALLGLTKALA EMAP+TRVN VAPGFVPT+
Sbjct: 90 LEKGSSVIFITSIAGFQPQGAMAMYGVTKTALLGLTKALAAEMAPDTRVNAVAPGFVPTH 149
Query: 382 FASFITSNDAMRQELEGKTILGRLGTTED 296
FASFIT + +R+ +E KT+L RLGTT D
Sbjct: 150 FASFITGSSEVREGIEEKTLLNRLGTTGD 178
>dbj|BAB18775.1| NADPH-dependent retinol dehydrogenase/reductase [Homo sapiens]
Length = 260
Score = 123 bits (309), Expect = 1e-27
Identities = 64/118 (54%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Frame = -1
Query: 553 GSSVVIISSIAGYNPPPAMAMYGVTKTALLGLTKALAGEMAP-NTRVNCVAPGFVPTNFA 377
G SVVI+SSIA ++P P + Y V+KTALLGLTK LA E+AP N RVNC+APG + T+F+
Sbjct: 143 GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFS 202
Query: 376 SFITSNDAMRQELEGKTILGRLGTTEDMAAATAFLASEDASYITGETLVVSGGMPSRL 203
+ + + ++ + RLG ED A +FL SEDASYITGET+VV GG PSRL
Sbjct: 203 RMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 260
>ref|NP_066284.1| peroxisomal short-chain alcohol dehydrogenase; NADP-dependent
retinol dehydrogenase; NADPH-dependent retinol
dehydrogenase/reductase [Homo sapiens]
gi|4105190|gb|AAD02292.1| peroxisomal short-chain
alcohol dehydrogenase [Homo sapiens]
Length = 260
Score = 123 bits (309), Expect = 1e-27
Identities = 64/118 (54%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Frame = -1
Query: 553 GSSVVIISSIAGYNPPPAMAMYGVTKTALLGLTKALAGEMAP-NTRVNCVAPGFVPTNFA 377
G SVVI+SSIA ++P P + Y V+KTALLGLTK LA E+AP N RVNC+APG + T+F+
Sbjct: 143 GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFS 202
Query: 376 SFITSNDAMRQELEGKTILGRLGTTEDMAAATAFLASEDASYITGETLVVSGGMPSRL 203
+ + + ++ + RLG ED A +FL SEDASYITGET+VV GG PSRL
Sbjct: 203 RMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 260
>dbj|BAA91953.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 123 bits (309), Expect = 1e-27
Identities = 64/118 (54%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Frame = -1
Query: 553 GSSVVIISSIAGYNPPPAMAMYGVTKTALLGLTKALAGEMAP-NTRVNCVAPGFVPTNFA 377
G SVVI+SSIA ++P P + Y V+KTALLGLTK LA E+AP N RVNC+APG + T+F+
Sbjct: 161 GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFS 220
Query: 376 SFITSNDAMRQELEGKTILGRLGTTEDMAAATAFLASEDASYITGETLVVSGGMPSRL 203
+ + + ++ + RLG ED A +FL SEDASYITGET+VV GG PSRL
Sbjct: 221 RMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,361,170
Number of Sequences: 1393205
Number of extensions: 11096701
Number of successful extensions: 29737
Number of sequences better than 10.0: 2508
Number of HSP's better than 10.0 without gapping: 27894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28578
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
