Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005730A_C01 KMC005730A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196876.1| unknown protein; protein id: At5g13720.1, suppo... 237 7e-62
dbj|BAC16129.1| contains ESTs AU173916(S20786),AU173917(S20786)~... 236 2e-61
gb|AAM20133.1| unknown protein [Arabidopsis thaliana] 236 2e-61
dbj|BAC16128.1| hypothetical protein~similar to Arabidopsis thal... 234 8e-61
ref|NP_567583.1| putative protein; protein id: At4g19390.1, supp... 143 2e-33
>ref|NP_196876.1| unknown protein; protein id: At5g13720.1, supported by cDNA:
gi_20465417 [Arabidopsis thaliana]
gi|9758038|dbj|BAB08699.1| gene_id:MSH12.19~unknown
protein [Arabidopsis thaliana]
gi|23297285|gb|AAN12932.1| unknown protein [Arabidopsis
thaliana]
Length = 262
Score = 237 bits (605), Expect = 7e-62
Identities = 119/135 (88%), Positives = 127/135 (93%)
Frame = -1
Query: 574 TCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSS 395
T C KG+H+G+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS++P DVPP DRAL+ SS
Sbjct: 125 TNCSKGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHSPHDVPPESDRALRSSS 184
Query: 394 LFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCI 215
LFGMFA+KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCI
Sbjct: 185 LFGMFAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCI 244
Query: 214 FLSSASLYILHNLHK 170
FLSSASLYILHNLHK
Sbjct: 245 FLSSASLYILHNLHK 259
>dbj|BAC16129.1| contains ESTs AU173916(S20786),AU173917(S20786)~similar to
Arabidopsis thaliana chromosome 5, At5g13720~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 286
Score = 236 bits (602), Expect = 2e-61
Identities = 118/135 (87%), Positives = 128/135 (94%)
Frame = -1
Query: 568 CVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLF 389
C+KGVH+G+MVL++VEAIDVYLAGTVMLIFGMGLYGLFISNT DVP DRAL+GSSLF
Sbjct: 143 CLKGVHTGQMVLKVVEAIDVYLAGTVMLIFGMGLYGLFISNTSTDVPSESDRALQGSSLF 202
Query: 388 GMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFL 209
GMFALKERPKWMKI+SLDELKTKVGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCIFL
Sbjct: 203 GMFALKERPKWMKITSLDELKTKVGHVIVMILLVKMFERSKMVKITTGLDLLSYSVCIFL 262
Query: 208 SSASLYILHNLHKTD 164
SSASLYILHNLH+ +
Sbjct: 263 SSASLYILHNLHRPE 277
>gb|AAM20133.1| unknown protein [Arabidopsis thaliana]
Length = 262
Score = 236 bits (602), Expect = 2e-61
Identities = 119/135 (88%), Positives = 126/135 (93%)
Frame = -1
Query: 574 TCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSS 395
T C KG+H+G+MVLRLVEAIDVYLAGTVMLIF MGLYGLFIS+ P DVPP DRAL+ SS
Sbjct: 125 TNCSKGIHTGQMVLRLVEAIDVYLAGTVMLIFSMGLYGLFISHWPHDVPPESDRALRSSS 184
Query: 394 LFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCI 215
LFGMFA+KERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMV I+TGLDLLSYSVCI
Sbjct: 185 LFGMFAMKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGLDLLSYSVCI 244
Query: 214 FLSSASLYILHNLHK 170
FLSSASLYILHNLHK
Sbjct: 245 FLSSASLYILHNLHK 259
>dbj|BAC16128.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g13720 [Oryza sativa (japonica cultivar-group)]
gi|23617125|dbj|BAC20807.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome 5, At5g13720 [Oryza
sativa (japonica cultivar-group)]
Length = 201
Score = 234 bits (596), Expect = 8e-61
Identities = 118/137 (86%), Positives = 130/137 (94%)
Frame = -1
Query: 574 TCCVKGVHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSS 395
T CV+GVH+G+MVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN PDVP S DRALKGSS
Sbjct: 64 TSCVRGVHTGQMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNDFPDVPAS-DRALKGSS 122
Query: 394 LFGMFALKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCI 215
LFGMFALKERP+WM+ISSLDELKTK+GH+IVMILLVKMFERSKMV I+TG+DLLSY+VCI
Sbjct: 123 LFGMFALKERPRWMRISSLDELKTKLGHIIVMILLVKMFERSKMVHITTGMDLLSYAVCI 182
Query: 214 FLSSASLYILHNLHKTD 164
FLSSASLYILHNLH+ +
Sbjct: 183 FLSSASLYILHNLHRPE 199
>ref|NP_567583.1| putative protein; protein id: At4g19390.1, supported by cDNA:
gi_14190356, supported by cDNA: gi_15810052 [Arabidopsis
thaliana] gi|14190357|gb|AAK55659.1|AF378856_1
AT4g19390/T5K18_170 [Arabidopsis thaliana]
Length = 273
Score = 143 bits (360), Expect = 2e-33
Identities = 72/128 (56%), Positives = 95/128 (73%)
Frame = -1
Query: 556 VHSGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNTPPDVPPSVDRALKGSSLFGMFA 377
V+ GK++ LVEAID+YL GTVML+FG+GLY LFISN + D SSLFGMF
Sbjct: 143 VNRGKVIFLLVEAIDIYLLGTVMLVFGLGLYELFISNLDTSESRTHDIVSNRSSLFGMFT 202
Query: 376 LKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVAISTGLDLLSYSVCIFLSSAS 197
LKERP+W+++ S+ ELKTK+GHVIVM+LL+ +F++SK V I++ DLL SV IF SSA
Sbjct: 203 LKERPQWLEVKSVSELKTKLGHVIVMLLLIGLFDKSKRVVITSVTDLLCISVSIFFSSAC 262
Query: 196 LYILHNLH 173
L++L L+
Sbjct: 263 LFLLSRLN 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,622,601
Number of Sequences: 1393205
Number of extensions: 10540298
Number of successful extensions: 25766
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25751
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
