Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005728A_C01 KMC005728A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198048.1| Kelch repeat containing F-box protein family; p... 94 1e-18
pir||T01772 hypothetical protein A_IG002P16.17 - Arabidopsis tha... 64 1e-09
gb|EAA21007.1| hypothetical protein [Plasmodium yoelii yoelii] 40 0.014
pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin ... 39 0.031
gb|EAA29880.1| hypothetical protein [Neurospora crassa] 38 0.053
>ref|NP_198048.1| Kelch repeat containing F-box protein family; protein id:
At5g26960.1 [Arabidopsis thaliana]
Length = 413
Score = 93.6 bits (231), Expect = 1e-18
Identities = 47/89 (52%), Positives = 58/89 (64%), Gaps = 8/89 (8%)
Frame = -1
Query: 456 GEWCRIKSPPLRAQVRVDTRMRFSCVGIGEKVVLIQLAGC--------GNDGRGSREGAV 301
GEW R+KSPPL AQVR+D +RFSCVG+ +KV ++Q+ GC G RG RE V
Sbjct: 324 GEWQRLKSPPLPAQVRLDGTVRFSCVGVEDKVAVVQVVGCIDDLLRRSGRGERGIRESLV 383
Query: 300 LVYDCATGEWGKGADLPEVYRRAAYVGVE 214
L+YD GEW + ADLPE+ RAA VE
Sbjct: 384 LLYDTTEGEWRRAADLPEMITRAACACVE 412
>pir||T01772 hypothetical protein A_IG002P16.17 - Arabidopsis thaliana
gi|2191178|gb|AAB61064.1| contains similarity to MIPP
proteins [Arabidopsis thaliana]
Length = 704
Score = 63.5 bits (153), Expect = 1e-09
Identities = 30/52 (57%), Positives = 39/52 (74%), Gaps = 5/52 (9%)
Frame = -1
Query: 456 GEWCRIKSPPLRAQVRVDTRMRFSCVGIGEKVVLIQLAGCGND-----GRGS 316
GEW R+KSPPL AQVR+D +RFSCVG+ +KV ++Q+ GC +D GRGS
Sbjct: 324 GEWQRLKSPPLPAQVRLDGTVRFSCVGVEDKVAVVQVVGCIDDLLRRSGRGS 375
>gb|EAA21007.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1115
Score = 40.0 bits (92), Expect = 0.014
Identities = 36/121 (29%), Positives = 47/121 (38%), Gaps = 1/121 (0%)
Frame = +3
Query: 36 QI*TKLQRTSQNRPITRRKCSFPKINQS*VPKIPHNLS*IPPTL*AFTQQ*STSPAHLSI 215
QI KL+ QN+ + KI Q P H + Q P S
Sbjct: 332 QIQPKLEPEPQNKENKALNEAQSKIKQQQPPSHQHPQP-------SSHQHPQPPPHQHSQ 384
Query: 216 PHPHRRRVDKPPVNQPLCPILRWRNHTPKQPLLLSPSHHSHTP-PIESAPPSPQFPRN*T 392
P PH+ PP P+ H +QP+ SP HH H P PI + P S P++ T
Sbjct: 385 PPPHQHS-QPPPHQHQQQPVSXSPQHHQQQPVSPSPQHHQHQPTPIPTPPASATTPKSST 443
Query: 393 S 395
S
Sbjct: 444 S 444
>pir||S20790 extensin - almond gi|20420|emb|CAA46634.1| extensin [Prunus dulcis]
gi|445616|prf||1909363A extensin
Length = 278
Score = 38.9 bits (89), Expect = 0.031
Identities = 28/101 (27%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
Frame = +3
Query: 126 PKIPHNLS*IPPTL*AFTQQ*STSPAHLSIP-HPHRRRVDKPPVNQPLCPILRWRNHTPK 302
PK P++ PP P H S P HP+ + PPV P +++ P
Sbjct: 65 PKHPYHYKSPPP------------PVHYSPPKHPYHYKSPPPPVYSPPKHPYHYKSPPPP 112
Query: 303 QPLLLSPSHHSHTPPIESAPPSPQFPRN*TSFSCPL*PAPA 425
P +H +PP PPSP P++ + P P+P+
Sbjct: 113 SPSPPKHPYHYKSPP----PPSPSPPKHPYHYKSPPPPSPS 149
Score = 37.7 bits (86), Expect = 0.069
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +3
Query: 192 TSPAHLSIP-HPHRRRVDKPPVNQPLCPILRWRNHTPKQPLLLSPSH--HSHTPPIESAP 362
T P H S P HP+ + PPV+ P + +P P+ P H H +PP P
Sbjct: 57 TPPVHYSPPKHPYHYKSPPPPVHYSP-PKHPYHYKSPPPPVYSPPKHPYHYKSPP----P 111
Query: 363 PSPQFPRN*TSFSCPL*PAPA 425
PSP P++ + P P+P+
Sbjct: 112 PSPSPPKHPYHYKSPPPPSPS 132
Score = 33.5 bits (75), Expect = 1.3
Identities = 24/100 (24%), Positives = 39/100 (39%)
Frame = +3
Query: 126 PKIPHNLS*IPPTL*AFTQQ*STSPAHLSIPHPHRRRVDKPPVNQPLCPILRWRNHTPKQ 305
PK P++ PP P + HP+ + PP P +++ P
Sbjct: 83 PKHPYHYKSPPP------------PVYSPPKHPYHYKSPPPPSPSPPKHPYHYKSPPPPS 130
Query: 306 PLLLSPSHHSHTPPIESAPPSPQFPRN*TSFSCPL*PAPA 425
P +H +PP PPSP P++ + P P+P+
Sbjct: 131 PSPPKHPYHYKSPP----PPSPSPPKHPYHYKSPPPPSPS 166
Score = 32.3 bits (72), Expect = 2.9
Identities = 26/99 (26%), Positives = 39/99 (39%)
Frame = +3
Query: 126 PKIPHNLS*IPPTL*AFTQQ*STSPAHLSIPHPHRRRVDKPPVNQPLCPILRWRNHTPKQ 305
PK P++ PP S SP HP+ + PP P +++ P
Sbjct: 100 PKHPYHYKSPPPP--------SPSPPK----HPYHYKSPPPPSPSPPKHPYHYKSPPPPS 147
Query: 306 PLLLSPSHHSHTPPIESAPPSPQFPRN*TSFSCPL*PAP 422
P +H +PP PPSP P++ + P P+P
Sbjct: 148 PSPPKHPYHYKSPP----PPSPSPPKHPYHYKSPPPPSP 182
>gb|EAA29880.1| hypothetical protein [Neurospora crassa]
Length = 1327
Score = 38.1 bits (87), Expect = 0.053
Identities = 26/84 (30%), Positives = 36/84 (41%), Gaps = 6/84 (7%)
Frame = +3
Query: 192 TSPAHLSIPHPHRRRVDKPPVNQPLCPILRWRNHTPKQPLLLSPSHHSHTPPI-----ES 356
T+ +++P PH PVN P R R+ TP+ P +P PP +
Sbjct: 819 TNGTEVALPPPHHPHATAVPVNIPFKAPQRQRSKTPQPPQPPAPQQTQLLPPATIPKNRA 878
Query: 357 AP-PSPQFPRN*TSFSCPL*PAPA 425
P P PQ PRN T+ + P A
Sbjct: 879 LPKPKPQAPRNRTNSGASIPPHTA 902
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,873,312
Number of Sequences: 1393205
Number of extensions: 12965643
Number of successful extensions: 45235
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 37961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43738
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
