Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005727A_C01 KMC005727A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566086.1| expressed protein; protein id: At2g46820.1, sup... 171 4e-42
gb|AAM63765.1| unknown [Arabidopsis thaliana] 171 5e-42
gb|AAL58119.1|AC092697_7 hypothetical protein [Oryza sativa (jap... 132 4e-30
gb|AAB00107.1| unknown 88 8e-17
ref|NP_567210.1| expressed protein; protein id: At4g01150.1, sup... 87 1e-16
>ref|NP_566086.1| expressed protein; protein id: At2g46820.1, supported by cDNA:
26967., supported by cDNA: gi_17473793 [Arabidopsis
thaliana] gi|7485752|pir||T02683 hypothetical protein
At2g46820 [imported] - Arabidopsis thaliana
gi|3510256|gb|AAC33500.1| expressed protein [Arabidopsis
thaliana] gi|17473794|gb|AAL38332.1| unknown protein
[Arabidopsis thaliana] gi|21386997|gb|AAM47902.1|
unknown protein [Arabidopsis thaliana]
Length = 174
Score = 171 bits (434), Expect = 4e-42
Identities = 82/127 (64%), Positives = 97/127 (75%), Gaps = 6/127 (4%)
Frame = -2
Query: 548 KTTVHCRKIARNVKAMATGE------TSAEVDTTELPEFVKNLQETWDKVDAKYAVGSVV 387
K T +CRKI RNV AT E T+ E +TTELPE VK QE W+KVD KYA+GS+
Sbjct: 48 KATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLA 107
Query: 386 VASVLALWASTGLLSAIDKLPLIPGVLELVGIGYTGWFAYKNLVFKPDREDLLQKIKGTY 207
A V+ALW S G++SAID+LPL+PGVLELVGIGYTGWF YKNLVFKPDRE L +K+K TY
Sbjct: 108 FAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTY 167
Query: 206 DEIIGSS 186
+I+GSS
Sbjct: 168 KDILGSS 174
>gb|AAM63765.1| unknown [Arabidopsis thaliana]
Length = 174
Score = 171 bits (433), Expect = 5e-42
Identities = 82/127 (64%), Positives = 97/127 (75%), Gaps = 6/127 (4%)
Frame = -2
Query: 548 KTTVHCRKIARNVKAMATGE------TSAEVDTTELPEFVKNLQETWDKVDAKYAVGSVV 387
K T +CRKI RNV AT E T+ E +TTELPE VK QE W+KVD KYA+GS+
Sbjct: 48 KATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLA 107
Query: 386 VASVLALWASTGLLSAIDKLPLIPGVLELVGIGYTGWFAYKNLVFKPDREDLLQKIKGTY 207
ASV+ALW S G++S ID+LPL+PGVLELVGIGYTGWF YKNLVFKPDRE L +K+K TY
Sbjct: 108 FASVVALWGSAGMISPIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTY 167
Query: 206 DEIIGSS 186
+I+GSS
Sbjct: 168 KDILGSS 174
>gb|AAL58119.1|AC092697_7 hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|21717152|gb|AAM76345.1|AC074196_3 hypothetical
protein [Oryza sativa (japonica cultivar-group)]
Length = 172
Score = 132 bits (331), Expect = 4e-30
Identities = 58/122 (47%), Positives = 89/122 (72%), Gaps = 2/122 (1%)
Frame = -2
Query: 554 QLKTTVHCRKIARNVKAMATGETSAE--VDTTELPEFVKNLQETWDKVDAKYAVGSVVVA 381
Q + C+++ARNV AMA GE A E+ EF+ L++ WD+++ KYAV ++ VA
Sbjct: 49 QPRVASFCKRLARNVVAMAAGEAPAAPLAANAEITEFINALKQEWDRIEDKYAVTTLAVA 108
Query: 380 SVLALWASTGLLSAIDKLPLIPGVLELVGIGYTGWFAYKNLVFKPDREDLLQKIKGTYDE 201
+ L +W++ G++SAID+LP++PG++E VGIGY+GWFAY+NL+FKPDRE K++ Y++
Sbjct: 109 ASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGYSGWFAYRNLLFKPDREAFFAKVREVYED 168
Query: 200 II 195
II
Sbjct: 169 II 170
>gb|AAB00107.1| unknown
Length = 164
Score = 87.8 bits (216), Expect = 8e-17
Identities = 42/108 (38%), Positives = 71/108 (64%)
Frame = -2
Query: 512 VKAMATGETSAEVDTTELPEFVKNLQETWDKVDAKYAVGSVVVASVLALWASTGLLSAID 333
+K A+ E ++ +DT EL + +L+E WD ++ K V +++A+W S+ ++ AI+
Sbjct: 59 LKTRASSEETSSIDTNEL---ITDLKEKWDGLENKSTVLIYGGGAIVAVWVSSIVVGAIN 115
Query: 332 KLPLIPGVLELVGIGYTGWFAYKNLVFKPDREDLLQKIKGTYDEIIGS 189
+PL+P V+ELVG+GYTGWF Y+ L+FK R++L + I+ +I GS
Sbjct: 116 SVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
>ref|NP_567210.1| expressed protein; protein id: At4g01150.1, supported by cDNA:
gi_14488087, supported by cDNA: gi_20147122, supported
by cDNA: gi_687676 [Arabidopsis thaliana]
gi|7485223|pir||T01726 hypothetical protein
A_IG002N01.18 - Arabidopsis thaliana
gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene product
[Arabidopsis thaliana] gi|7267612|emb|CAB80924.1|
hypothetical protein [Arabidopsis thaliana]
gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18
[Arabidopsis thaliana] gi|20147123|gb|AAM10278.1|
AT4g01150/F2N1_18 [Arabidopsis thaliana]
Length = 164
Score = 87.4 bits (215), Expect = 1e-16
Identities = 42/108 (38%), Positives = 71/108 (64%)
Frame = -2
Query: 512 VKAMATGETSAEVDTTELPEFVKNLQETWDKVDAKYAVGSVVVASVLALWASTGLLSAID 333
+K A+ E ++ +DT EL + +L+E WD ++ K V +++A+W S+ ++ AI+
Sbjct: 59 LKTRASSEETSSIDTNEL---ITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAIN 115
Query: 332 KLPLIPGVLELVGIGYTGWFAYKNLVFKPDREDLLQKIKGTYDEIIGS 189
+PL+P V+ELVG+GYTGWF Y+ L+FK R++L + I+ +I GS
Sbjct: 116 SVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGS 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,423,659
Number of Sequences: 1393205
Number of extensions: 10340438
Number of successful extensions: 30035
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 28610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29956
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
