Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005726A_C01 KMC005726A_c01
(681 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196930.2| putative protein; protein id: At5g14260.1, supp... 152 3e-36
gb|AAL67009.1| unknown protein [Arabidopsis thaliana] 152 3e-36
pir||T48599 hypothetical protein F18O22.50 - Arabidopsis thalian... 79 5e-16
pir||T08995 ribulose-1,5-bisphosphate carboxylase/oxygenase N-me... 43 0.003
pir||T08996 ribulose-1,5-bisphosphate carboxylase/oxygenase smal... 43 0.003
>ref|NP_196930.2| putative protein; protein id: At5g14260.1, supported by cDNA:
gi_17473569, supported by cDNA: gi_18377717 [Arabidopsis
thaliana] gi|17473570|gb|AAL38260.1| putative protein
[Arabidopsis thaliana] gi|23297671|gb|AAN13005.1|
unknown protein [Arabidopsis thaliana]
Length = 514
Score = 152 bits (385), Expect = 3e-36
Identities = 73/103 (70%), Positives = 87/103 (83%)
Frame = -1
Query: 681 EMPSVISSQGPVCAVSPCMERAVLNQLANYFKSRLAGYPTTLAEDESMLTDDSLNPKKRV 502
EM SVISSQGPVC +SPCMERAVL+QLANYF RL+GYPTT ED+++L D SL+P+KRV
Sbjct: 412 EMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDALLADPSLSPRKRV 471
Query: 501 ATQLVRLEKKMLHACLQATADFINQLPDHSVSPCPAAYAPLLK 373
AT+LV+LEKK+L ACL T D +NQLPD ++SPCPA YAP LK
Sbjct: 472 ATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSLK 514
>gb|AAL67009.1| unknown protein [Arabidopsis thaliana]
Length = 514
Score = 152 bits (385), Expect = 3e-36
Identities = 73/103 (70%), Positives = 87/103 (83%)
Frame = -1
Query: 681 EMPSVISSQGPVCAVSPCMERAVLNQLANYFKSRLAGYPTTLAEDESMLTDDSLNPKKRV 502
EM SVISSQGPVC +SPCMERAVL+QLANYF RL+GYPTT ED+++L D SL+P+KRV
Sbjct: 412 EMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDALLADPSLSPRKRV 471
Query: 501 ATQLVRLEKKMLHACLQATADFINQLPDHSVSPCPAAYAPLLK 373
AT+LV+LEKK+L ACL T D +NQLPD ++SPCPA YAP LK
Sbjct: 472 ATRLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSLK 514
>pir||T48599 hypothetical protein F18O22.50 - Arabidopsis thaliana
gi|7573451|emb|CAB87765.1| putative protein [Arabidopsis
thaliana]
Length = 537
Score = 79.0 bits (193), Expect(2) = 5e-16
Identities = 39/56 (69%), Positives = 46/56 (81%)
Frame = -1
Query: 681 EMPSVISSQGPVCAVSPCMERAVLNQLANYFKSRLAGYPTTLAEDESMLTDDSLNP 514
EM SVISSQGPVC +SPCMERAVL+QLANYF RL+GYPTT ED+++ + S NP
Sbjct: 430 EMQSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDAL--EASCNP 483
Score = 27.3 bits (59), Expect(2) = 5e-16
Identities = 17/52 (32%), Positives = 20/52 (37%)
Frame = -3
Query: 520 ESKETSSYSAC*AGKENASCMFAGNS*FHKPAS*PQCISMPCCICTFIKMKG 365
++ E S AC G+EN SCM NS CC C M G
Sbjct: 475 DALEASCNPACPTGEENTSCMPYDNS--------------SCCSCNLWDMAG 512
>pir||T08995 ribulose-1,5-bisphosphate carboxylase/oxygenase N-methyltransferase
- spinach chloroplast gi|3403234|gb|AAC29136.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase
N-methyltransferase [Spinacia oleracea]
gi|3403238|gb|AAC29138.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
II [Spinacia oleracea]
Length = 495
Score = 43.1 bits (100), Expect = 0.003
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = -1
Query: 639 VSPCMERAVLNQLANYFKSRLAGYPTTLAEDESMLTDDSLNPKKRVATQLVRLEKKML 466
+SP E + + + S L+GY TT+AEDE +L + ++P+ +A + EKK+L
Sbjct: 394 ISPANEELICQVIRDACTSALSGYSTTIAEDEKLLAEGDIDPRLEIAITIRLGEKKVL 451
>pir||T08996 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
N-methyltransferase I - spinach chloroplast
gi|3403236|gb|AAC29137.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit N-methyltransferase
I [Spinacia oleracea]
Length = 491
Score = 43.1 bits (100), Expect = 0.003
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = -1
Query: 639 VSPCMERAVLNQLANYFKSRLAGYPTTLAEDESMLTDDSLNPKKRVATQLVRLEKKML 466
+SP E + + + S L+GY TT+AEDE +L + ++P+ +A + EKK+L
Sbjct: 390 ISPANEELICQVIRDACTSALSGYSTTIAEDEKLLAEGDIDPRLEIAITIRLGEKKVL 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,428,425
Number of Sequences: 1393205
Number of extensions: 12724877
Number of successful extensions: 32246
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 31235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32238
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
