Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005724A_C01 KMC005724A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplast prec... 140 2e-32
ref|NP_174202.1| plastid ribosomal protein L34 precursor, putati... 134 9e-31
dbj|BAB92266.1| putative 50S ribosomal protein L34 [Oryza sativa... 116 3e-25
ref|NP_219388.1| ribosomal protein L34 (rpmH) [Treponema pallidu... 49 7e-05
ref|NP_795333.1| ribosomal protein L34 [Pseudomonas syringae pv.... 48 9e-05
>sp|P82244|RK34_SPIOL 50S ribosomal protein L34, chloroplast precursor
gi|7578860|gb|AAF64157.1|AF238221_1 plastid ribosomal
protein L34 precursor [Spinacia oleracea]
Length = 152
Score = 140 bits (352), Expect = 2e-32
Identities = 82/132 (62%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Frame = -1
Query: 619 TASLAF-TASSSIPTTSSLSLHNTRSPLLRCSFLSSPSSLSFPSSSLSGLSLGLDLISNA 443
+ASL F T S + S + + RS L CSFL+ SSLS S+ SGLSLGLDL SN
Sbjct: 21 SASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPSSSLS---SNFSGLSLGLDLTSNT 77
Query: 442 GTGNGKRRGLVVRAGKKFALCQTKRNRSRKSLARTHGFRRRMRTTGGRAILRRRRAKGRK 263
G + R VVRAGK ALC TKR+RSRKSLARTHGFR RM TT GRA+L+RRRAKGRK
Sbjct: 78 GVSTDRCRRFVVRAGKA-ALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRK 136
Query: 262 VLCTKTHPNSGK 227
+LCTKT+P+SGK
Sbjct: 137 ILCTKTNPSSGK 148
>ref|NP_174202.1| plastid ribosomal protein L34 precursor, putative; protein id:
At1g29070.1, supported by cDNA: 11466., supported by
cDNA: gi_17380839, supported by cDNA: gi_20259638
[Arabidopsis thaliana] gi|25373059|pir||A86413 probable
ribosomal protein L34 [imported] - Arabidopsis thaliana
gi|9502428|gb|AAF88127.1|AC021043_20 Putative ribosomal
protein L34 [Arabidopsis thaliana]
gi|17380840|gb|AAL36232.1| putative plastid ribosomal
protein L34 precursor [Arabidopsis thaliana]
gi|20259639|gb|AAM14176.1| putative plastid ribosomal
protein L34 precursor [Arabidopsis thaliana]
gi|21536900|gb|AAM61232.1| plastid ribosomal protein L34
precursor, putative [Arabidopsis thaliana]
Length = 157
Score = 134 bits (337), Expect = 9e-31
Identities = 81/123 (65%), Positives = 90/123 (72%), Gaps = 1/123 (0%)
Frame = -1
Query: 592 SSIPTTSSLSLHNTRSPLLRCSFLSSPSSLSFPSSSLSGLSLGLDLISNAGTGNG-KRRG 416
SS TSS S S LL CSFLSSP SL+ P SGLS+ DL S NG +RRG
Sbjct: 42 SSSSLTSSAS-----SQLLHCSFLSSPVSLASP---FSGLSIAFDLSSQTSGLNGQRRRG 93
Query: 415 LVVRAGKKFALCQTKRNRSRKSLARTHGFRRRMRTTGGRAILRRRRAKGRKVLCTKTHPN 236
LVVRAGK ALCQTKR+RSRKSLARTHGFRRRMRTT GRA ++RRRAKGR LC K++P+
Sbjct: 94 LVVRAGKA-ALCQTKRSRSRKSLARTHGFRRRMRTTSGRATIKRRRAKGRWNLCPKSNPS 152
Query: 235 SGK 227
SGK
Sbjct: 153 SGK 155
>dbj|BAB92266.1| putative 50S ribosomal protein L34 [Oryza sativa (japonica
cultivar-group)]
Length = 159
Score = 116 bits (290), Expect = 3e-25
Identities = 71/125 (56%), Positives = 84/125 (66%), Gaps = 18/125 (14%)
Frame = -1
Query: 547 SPLLRCSFLSSPS-----------------SLSFPS-SSLSGLSLGLDLISNAGTGNGKR 422
+P LR SF+SS S SL+F S SS +G SLG++ N T G+
Sbjct: 33 TPFLRSSFVSSSSTSSASASPAALSAAVSASLTFTSASSFAGSSLGIEFSYNRVT-TGRS 91
Query: 421 RGLVVRAGKKFALCQTKRNRSRKSLARTHGFRRRMRTTGGRAILRRRRAKGRKVLCTKTH 242
R L +RAGK ALC TKRNRSRKSLARTHGFRRRMRTT GR +L+RRRAKGR+VLCTKT+
Sbjct: 92 RILQIRAGKA-ALCMTKRNRSRKSLARTHGFRRRMRTTAGRKVLKRRRAKGRRVLCTKTN 150
Query: 241 PNSGK 227
+GK
Sbjct: 151 SPTGK 155
>ref|NP_219388.1| ribosomal protein L34 (rpmH) [Treponema pallidum]
gi|6094060|sp|O83917|RL34_TREPA 50S ribosomal protein
L34 gi|7441163|pir||E71261 probable ribosomal protein
L34 (rpmH) - syphilis spirochete
gi|3323275|gb|AAC65910.1| ribosomal protein L34 (rpmH)
[Treponema pallidum]
Length = 51
Score = 48.5 bits (114), Expect = 7e-05
Identities = 24/35 (68%), Positives = 26/35 (73%)
Frame = -1
Query: 361 SRKSLARTHGFRRRMRTTGGRAILRRRRAKGRKVL 257
SR+ R GFR RM T GGRAILRRRRAKGR+ L
Sbjct: 8 SRRKRVRKFGFRARMATRGGRAILRRRRAKGRRKL 42
>ref|NP_795333.1| ribosomal protein L34 [Pseudomonas syringae pv. tomato str. DC3000]
gi|28855970|gb|AAO59028.1| ribosomal protein L34
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 44
Score = 48.1 bits (113), Expect = 9e-05
Identities = 23/30 (76%), Positives = 24/30 (79%)
Frame = -1
Query: 346 ARTHGFRRRMRTTGGRAILRRRRAKGRKVL 257
ARTHGFR RM T GRA+L RRRAKGRK L
Sbjct: 13 ARTHGFRARMATKNGRAVLSRRRAKGRKRL 42
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,711,474
Number of Sequences: 1393205
Number of extensions: 13229329
Number of successful extensions: 70509
Number of sequences better than 10.0: 333
Number of HSP's better than 10.0 without gapping: 53856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66730
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
