Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005722A_C01 KMC005722A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86192 hypothetical protein [imported] - Arabidopsis thalia... 176 1e-47
ref|NP_172073.1| unknown protein; protein id: At1g05820.1 [Arabi... 176 3e-46
ref|NP_181835.1| unknown protein; protein id: At2g43105.1 [Arabi... 147 3e-43
dbj|BAB92664.1| vacuolar sorting receptor-like protein [Oryza sa... 120 3e-32
ref|NP_564815.1| expressed protein; protein id: At1g63690.1, sup... 115 6e-29
>pir||H86192 hypothetical protein [imported] - Arabidopsis thaliana
gi|6850311|gb|AAF29388.1|AC009999_8 Contains similarity
to a vacuolar sorting receptor homolog from Arabidopsis
thaliana gb|U79959
Length = 536
Score = 176 bits (446), Expect(2) = 1e-47
Identities = 83/155 (53%), Positives = 119/155 (76%), Gaps = 1/155 (0%)
Frame = +1
Query: 1 SVALCTRGGCDFTTKAAFAQSGGASAMLLINDEEDLFEMACSNS-TGGNISIPVVLITKS 177
S+AL RG C FT KA AQ+GGA+A++LIND+E+L EM C T N+SIP+++IT S
Sbjct: 103 SIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDEMVCGEKDTSLNVSIPILMITTS 162
Query: 178 AGEAFNKSLASGRKVEVLLYAPPSPLVDFSFAFLWLMAVGTIVCASLWSDITTPKKSGEH 357
+G+A KS+ +KVE+LLYAP SP+VD++ FLWLM+VGT+ AS+WS +T+PKK+ E
Sbjct: 163 SGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTVFVASVWSHVTSPKKNDEQ 222
Query: 358 YNELFPKESSNVEGAKDVSDKEILNINSMSAVVFI 462
Y+EL PK+SSNV+ K +++E L+I++M AV+F+
Sbjct: 223 YDELSPKKSSNVDATKGGAEEETLDISAMGAVIFV 257
Score = 35.4 bits (80), Expect(2) = 1e-47
Identities = 17/43 (39%), Positives = 26/43 (59%)
Frame = +3
Query: 474 LSLLIYYSSSCHLGLIWVLVVLFCIAGVEGMHNCIISLTLRKC 602
L LL ++ SS I +L + F I G++GMHN ++L R+C
Sbjct: 264 LVLLFFFMSSW---FILILTIFFVIGGMQGMHNINVTLITRRC 303
>ref|NP_172073.1| unknown protein; protein id: At1g05820.1 [Arabidopsis thaliana]
Length = 441
Score = 176 bits (446), Expect(2) = 3e-46
Identities = 83/155 (53%), Positives = 119/155 (76%), Gaps = 1/155 (0%)
Frame = +1
Query: 1 SVALCTRGGCDFTTKAAFAQSGGASAMLLINDEEDLFEMACSNS-TGGNISIPVVLITKS 177
S+AL RG C FT KA AQ+GGA+A++LIND+E+L EM C T N+SIP+++IT S
Sbjct: 103 SIALSVRGECAFTVKAQVAQAGGAAALVLINDKEELDEMVCGEKDTSLNVSIPILMITTS 162
Query: 178 AGEAFNKSLASGRKVEVLLYAPPSPLVDFSFAFLWLMAVGTIVCASLWSDITTPKKSGEH 357
+G+A KS+ +KVE+LLYAP SP+VD++ FLWLM+VGT+ AS+WS +T+PKK+ E
Sbjct: 163 SGDALKKSIMQNKKVELLLYAPKSPIVDYAVVFLWLMSVGTVFVASVWSHVTSPKKNDEQ 222
Query: 358 YNELFPKESSNVEGAKDVSDKEILNINSMSAVVFI 462
Y+EL PK+SSNV+ K +++E L+I++M AV+F+
Sbjct: 223 YDELSPKKSSNVDATKGGAEEETLDISAMGAVIFV 257
Score = 30.8 bits (68), Expect(2) = 3e-46
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = +2
Query: 464 ISTSVTLDLLFFFMSSWFNL 523
IS S L LLFFFMSSWF L
Sbjct: 258 ISASTFLVLLFFFMSSWFIL 277
>ref|NP_181835.1| unknown protein; protein id: At2g43105.1 [Arabidopsis thaliana]
gi|25408833|pir||F84861 hypothetical protein At2g43070
[imported] - Arabidopsis thaliana
gi|20197149|gb|AAM14939.1| unknown protein [Arabidopsis
thaliana] gi|20197629|gb|AAM15159.1| unknown protein
[Arabidopsis thaliana]
Length = 543
Score = 147 bits (371), Expect(2) = 3e-43
Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 VALCTRGGCDFTTKAAFAQSGGASAMLLINDEEDLFEMAC-SNSTGGNISIPVVLITKSA 180
+AL RG C FT KA A++ GASA+L+IND+EDL EM C T N+SIPV++I+KS+
Sbjct: 108 IALSIRGNCAFTEKAKHAEAAGASALLVINDKEDLDEMGCMEKDTSLNVSIPVLMISKSS 167
Query: 181 GEAFNKSLASGRKVEVLLYAPPSPLVDFSFAFLWLMAVGTIVCASLWSDITTPKKSGEHY 360
G+A NKS+ + VE+LLYAP P VD + L LMAVGT+V ASLWS++T P ++ E Y
Sbjct: 168 GDALNKSMVDNKNVELLLYAPKRPAVDLTAGLLLLMAVGTVVVASLWSELTDPDQANESY 227
Query: 361 NELFPKESSNVEGAKDVSDKEILNINSMSAVVFI 462
+ + K+ S+ KD +KEIL+I+ AV FI
Sbjct: 228 S-ILAKDVSSAGTRKDDPEKEILDISVTGAVFFI 260
Score = 49.7 bits (117), Expect(2) = 3e-43
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +3
Query: 474 LSLLIYYSSSCHLGLIWVLVVLFCIAGVEGMHNCIISLTLRKC 602
L LL Y+ SS +WVL + FCI G++GMHN I+++ LRKC
Sbjct: 267 LLLLFYFMSSW---FVWVLTIFFCIGGMQGMHNIIMAVILRKC 306
>dbj|BAB92664.1| vacuolar sorting receptor-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 569
Score = 120 bits (301), Expect(3) = 3e-32
Identities = 65/161 (40%), Positives = 98/161 (60%), Gaps = 7/161 (4%)
Frame = +1
Query: 1 SVALCTRGGCDFTTKAAFAQSGGASAMLLINDEE------DLFEMACS-NSTGGNISIPV 159
S+A+ RG C F KA A+SGGA+A+LLINDE+ DL +M C+ N T NI IPV
Sbjct: 116 SIAVAERGECTFLEKAKTAESGGAAALLLINDEDGQVLRVDLQKMVCTQNDTVPNIGIPV 175
Query: 160 VLITKSAGEAFNKSLASGRKVEVLLYAPPSPLVDFSFAFLWLMAVGTIVCASLWSDITTP 339
V++++SAG + G KV++L+YAP P D + FLWLMAVG++ CAS+WS +
Sbjct: 176 VMVSQSAGRKILSGMDGGAKVDILMYAPEKPSFDGAIPFLWLMAVGSVACASVWSFVVVG 235
Query: 340 KKSGEHYNELFPKESSNVEGAKDVSDKEILNINSMSAVVFI 462
+ +++ G ++ +D EI+ + + +A+VFI
Sbjct: 236 DED----------KNAPTLGGEEAADSEIVELQTKTALVFI 266
Score = 36.6 bits (83), Expect(3) = 3e-32
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 522 WVLVVLFCIAGVEGMHNCIISLTLRKC 602
W+LVVLFC++G++G+H +L +R C
Sbjct: 286 WLLVVLFCLSGLQGLHYVASTLIVRTC 312
Score = 23.5 bits (49), Expect(3) = 3e-32
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 452 LYLFISTSVTLDLLFFFMSSW 514
L ++ S+ L LFFF S+W
Sbjct: 263 LVFIVTASLVLLFLFFFKSTW 283
>ref|NP_564815.1| expressed protein; protein id: At1g63690.1, supported by cDNA:
2571., supported by cDNA: gi_17065461 [Arabidopsis
thaliana] gi|17065462|gb|AAL32885.1| Unknown protein
[Arabidopsis thaliana]
Length = 540
Score = 115 bits (287), Expect(2) = 6e-29
Identities = 61/154 (39%), Positives = 94/154 (60%), Gaps = 1/154 (0%)
Frame = +1
Query: 4 VALCTRGGCDFTTKAAFAQSGGASAMLLINDEEDLFEMACS-NSTGGNISIPVVLITKSA 180
V + RG C FT KA A++ GASA+L+IN++++L++M C + T +I IP V++ + A
Sbjct: 107 VVIVERGNCRFTAKANNAEAAGASALLIINNQKELYKMVCEPDETDLDIQIPAVMLPQDA 166
Query: 181 GEAFNKSLASGRKVEVLLYAPPSPLVDFSFAFLWLMAVGTIVCASLWSDITTPKKSGEHY 360
G + K LA+ KV LY+P P VD + FLWLMA+GTI+CAS WS + + + EH
Sbjct: 167 GASLQKMLANSSKVSAQLYSPRRPAVDVAEVFLWLMAIGTILCASYWSAWSAREAAIEH- 225
Query: 361 NELFPKESSNVEGAKDVSDKEILNINSMSAVVFI 462
++L + D ++ INS+SA+ F+
Sbjct: 226 DKLLKDAIDEIPNTND-GGSGVVEINSISAIFFV 258
Score = 34.3 bits (77), Expect(2) = 6e-29
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +3
Query: 525 VLVVLFCIAGVEGMHNCIISLTLR 596
+LVV+FCI GVEG+ C+++L R
Sbjct: 279 LLVVVFCIGGVEGLQTCLVALLSR 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,426,681
Number of Sequences: 1393205
Number of extensions: 11171642
Number of successful extensions: 41744
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 40429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41703
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
