Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005721A_C01 KMC005721A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172202.1| hypothetical protein; protein id: At1g07220.1 [... 132 2e-30
ref|NP_197774.1| putative protein; protein id: At5g23850.1 [Arab... 102 3e-21
ref|NP_190467.1| putative protein; protein id: At3g48980.1 [Arab... 100 1e-20
pir||A96660 protein F2K11.20 [imported] - Arabidopsis thaliana g... 89 3e-17
gb|AAK50079.1|AF372939_1 At1g63420/F2K11_19 [Arabidopsis thalian... 89 3e-17
>ref|NP_172202.1| hypothetical protein; protein id: At1g07220.1 [Arabidopsis
thaliana] gi|25349334|pir||D86207 hypothetical protein
[imported] - Arabidopsis thaliana
gi|8954024|gb|AAF82198.1|AC067971_6 Contains similarity
to an unknown protein T2J13.180 gi|6522568 from
Arabidopsis thaliana BAC T2J13 gb|AL132967. ESTs
gb|Z29835 and gb|Z29836 come from this gene
Length = 507
Score = 132 bits (333), Expect = 2e-30
Identities = 61/101 (60%), Positives = 75/101 (73%)
Frame = -3
Query: 566 VDPLNLCPSIKNAVDWGNQHPREAEAIGKRGQDFMESLSMDRIYDYMLHLISEYAKLQDF 387
+ P +LC SIK AVDWGN +P EAE IGKRGQ +MESLSM+R+YDYM HLI+EY+KLQ F
Sbjct: 370 ISPTDLCRSIKYAVDWGNSNPSEAETIGKRGQGYMESLSMNRVYDYMFHLITEYSKLQKF 429
Query: 386 KPSPPPTALEVCSESVLCFADDKQRMFLSKSTTSPSQTPPC 264
KP P +A EVC+ S+LC A+ K+R L +S PS PC
Sbjct: 430 KPEKPASANEVCAGSLLCIAEQKERELLERSRVVPSLDQPC 470
>ref|NP_197774.1| putative protein; protein id: At5g23850.1 [Arabidopsis thaliana]
gi|10176852|dbj|BAB10058.1| contains similarity to
unknown protein~emb|CAB62012.1~gene_id:MRO11.11
[Arabidopsis thaliana]
Length = 542
Score = 102 bits (254), Expect = 3e-21
Identities = 47/101 (46%), Positives = 67/101 (65%), Gaps = 2/101 (1%)
Frame = -3
Query: 548 CPSIKNAVDWGNQHPREAEAIGKRGQDFMES-LSMDRIYDYMLHLISEYAKLQDFKPSPP 372
C SIK AVDWGN H ++A+ IGK DF++ L MD +YDYM HL++EY+KL FKP P
Sbjct: 405 CRSIKFAVDWGNSHIQKAQDIGKAASDFIQQDLKMDYVYDYMYHLLTEYSKLLQFKPEIP 464
Query: 371 PTALEVCSESVLCFADDKQRMFLSKS-TTSPSQTPPCTLKP 252
A+E+CSE++ C +R F+++S P+ + PC + P
Sbjct: 465 RNAVEICSETMACLRSGNERKFMTESLVKQPADSGPCAMPP 505
>ref|NP_190467.1| putative protein; protein id: At3g48980.1 [Arabidopsis thaliana]
gi|11281902|pir||T46132 hypothetical protein T2J13.180 -
Arabidopsis thaliana gi|6522568|emb|CAB62012.1| putative
protein [Arabidopsis thaliana]
Length = 539
Score = 100 bits (249), Expect = 1e-20
Identities = 47/101 (46%), Positives = 67/101 (65%), Gaps = 2/101 (1%)
Frame = -3
Query: 548 CPSIKNAVDWGNQHPREAEAIGKRGQDFMES-LSMDRIYDYMLHLISEYAKLQDFKPSPP 372
C SIK AVDWGN H R+A+ IGK+ +F++ L MD +YDYM HL+ +Y+KL FKP P
Sbjct: 402 CRSIKFAVDWGNLHMRKAQDIGKKASEFVQQELKMDYVYDYMFHLLIQYSKLLRFKPEIP 461
Query: 371 PTALEVCSESVLCFADDKQRMFLSKSTTS-PSQTPPCTLKP 252
+ E+CSE++ C D +R F+ +S P++T PC + P
Sbjct: 462 QNSTELCSEAMACPRDGNERKFMMESLVKRPAETGPCAMPP 502
>pir||A96660 protein F2K11.20 [imported] - Arabidopsis thaliana
gi|6633846|gb|AAF19705.1|AC008047_12 F2K11.20
[Arabidopsis thaliana]
Length = 605
Score = 89.4 bits (220), Expect = 3e-17
Identities = 40/106 (37%), Positives = 68/106 (63%), Gaps = 7/106 (6%)
Frame = -3
Query: 548 CPSIKNAVDWGNQHPREAEAIGKRGQDFME-SLSMDRIYDYMLHLISEYAKLQDFKPSPP 372
C SIK AVDW N H ++A+ IG+ +FM+ LSM+ +YDYM HL++EY+KL +KP P
Sbjct: 467 CRSIKFAVDWLNNHTQKAQEIGREASEFMQRDLSMENVYDYMFHLLNEYSKLLKYKPQVP 526
Query: 371 PTALEVCSESVLCFADDK------QRMFLSKSTTSPSQTPPCTLKP 252
++E+C+E+++C ++ + ++ + + P + PC+L P
Sbjct: 527 KNSVELCTEALVCPSEGEDVNGVDKKFMIGSLVSRPHASGPCSLPP 572
>gb|AAK50079.1|AF372939_1 At1g63420/F2K11_19 [Arabidopsis thaliana]
gi|21700873|gb|AAM70560.1| At1g63420/F2K11_19
[Arabidopsis thaliana]
Length = 228
Score = 89.4 bits (220), Expect = 3e-17
Identities = 40/106 (37%), Positives = 68/106 (63%), Gaps = 7/106 (6%)
Frame = -3
Query: 548 CPSIKNAVDWGNQHPREAEAIGKRGQDFME-SLSMDRIYDYMLHLISEYAKLQDFKPSPP 372
C SIK AVDW N H ++A+ IG+ +FM+ LSM+ +YDYM HL++EY+KL +KP P
Sbjct: 90 CRSIKFAVDWLNNHTQKAQEIGREASEFMQRDLSMENVYDYMFHLLNEYSKLLKYKPQVP 149
Query: 371 PTALEVCSESVLCFADDK------QRMFLSKSTTSPSQTPPCTLKP 252
++E+C+E+++C ++ + ++ + + P + PC+L P
Sbjct: 150 KNSVELCTEALVCPSEGEDVNGVDKKFMIGSLVSRPHASGPCSLPP 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,288,003
Number of Sequences: 1393205
Number of extensions: 10775112
Number of successful extensions: 24531
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 23712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24510
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
