Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005719A_C01 KMC005719A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175397.1| unknown protein; protein id: At1g49750.1 [Arabi... 70 2e-11
ref|NP_188563.1| unknown protein; protein id: At3g19320.1 [Arabi... 60 2e-08
dbj|BAB83614.1| extensin-like protein [Arabidopsis thaliana] 38 0.12
gb|AAC34396.1| LRP1 [Takifugu rubripes] 33 3.0
gb|EAA15966.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.6
>ref|NP_175397.1| unknown protein; protein id: At1g49750.1 [Arabidopsis thaliana]
gi|25405332|pir||B96534 hypothetical protein F14J22.4
[imported] - Arabidopsis thaliana
gi|10120434|gb|AAG13059.1|AC011807_18 Unknown protein
[Arabidopsis thaliana]
Length = 494
Score = 70.1 bits (170), Expect = 2e-11
Identities = 38/87 (43%), Positives = 49/87 (55%), Gaps = 2/87 (2%)
Frame = -1
Query: 618 ECWKLIKSKVPDVSKNCIPGLSNQKSPKECYDFKCKVKPCQNQQSLSYVPC--KGYWQKE 445
+C KLIK K+ DVS NCI L NQK+P EC F + + C N +SL VPC K
Sbjct: 406 KCRKLIKRKIMDVSMNCILDLPNQKTPSECAKFFMRKQTCPNSKSLFTVPCDKNPNRGKP 465
Query: 444 GESSVSKASSAPSEPVTYKSLKPHRLR 364
+ + + + S PVTY +L P RLR
Sbjct: 466 DQERLEEEKAQVSHPVTYNTLNPDRLR 492
>ref|NP_188563.1| unknown protein; protein id: At3g19320.1 [Arabidopsis thaliana]
gi|11994454|dbj|BAB02456.1| contains similarity to
receptor protein kinase~gene_id:MLD14.4 [Arabidopsis
thaliana]
Length = 493
Score = 60.5 bits (145), Expect = 2e-08
Identities = 33/86 (38%), Positives = 50/86 (57%), Gaps = 1/86 (1%)
Frame = -1
Query: 618 ECWKLIKSKVPDVSKNCIPGLSNQKSPKECYDFKCKVKPCQNQQSLSYVPC-KGYWQKEG 442
+C LIK K+ DV NCI L+NQ++P EC F + + C N +S Y+PC K + +
Sbjct: 408 KCRTLIKRKILDVGMNCILDLTNQRTPWECAKFFLRKQSCPNFKSFFYLPCGKDPHRIKP 467
Query: 441 ESSVSKASSAPSEPVTYKSLKPHRLR 364
+ S ++P PV+Y +L P R+R
Sbjct: 468 DQEGSDGQASP--PVSYNALNPDRIR 491
>dbj|BAB83614.1| extensin-like protein [Arabidopsis thaliana]
Length = 404
Score = 37.7 bits (86), Expect = 0.12
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 615 CWKLIKSKVPDVSKNCIPGLSNQKSPKECYDFKCKVKP--CQNQQSLSYVPCKGYWQKEG 442
C L++ V DV NCIP Q+S +EC +F K K C + S+ C+
Sbjct: 332 CRGLLEKGVLDVGNNCIPFFPGQRSMQECAEFFVKPKKYYCPHMWFHSFFSCRYSHISSS 391
Query: 441 ESSVSKASSAPS 406
SS APS
Sbjct: 392 SSSAFMPMVAPS 403
>gb|AAC34396.1| LRP1 [Takifugu rubripes]
Length = 1581
Score = 33.1 bits (74), Expect = 3.0
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = -1
Query: 591 VPDVSKNCIPGLSNQKSPKECYDFKCKVKPCQNQQSLSYVPCKGYWQKEGESSVSKASSA 412
V D +C+ G P C C V + + S +P + W+ +GE AS
Sbjct: 504 VCDRDNDCVDG---SDEPANCTQMTCGVDEFRCKDSGRCIPAR--WKCDGEDDCGDASDE 558
Query: 411 PSEPVTYKSLKPHRLR 364
P E ++ +P++ R
Sbjct: 559 PKEECAERTCEPYQFR 574
>gb|EAA15966.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 499
Score = 32.0 bits (71), Expect = 6.6
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 19/76 (25%)
Frame = +1
Query: 76 INSNDSKLDNMSLFMMNIHNLQLSTSLQGCNLTSFESP------------------HYH- 198
+N++ L N+S NIHN+Q N+T+ P H H
Sbjct: 371 VNNDKKVLQNISFLKENIHNMQDEIKQIRKNITNKSDPKNLQKIFTSELSGLKNLFHSHA 430
Query: 199 QHHKRNCDCITLHLST 246
QHHK+N + IT L++
Sbjct: 431 QHHKKNIEDITNRLTS 446
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,133,063
Number of Sequences: 1393205
Number of extensions: 9031848
Number of successful extensions: 21036
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21003
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
