Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005718A_C01 KMC005718A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM33177.2| similar to Plasmodium falciparum (isolate 3D7). H... 47 2e-04
sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdS... 35 9e-04
dbj|BAB01489.1| AmiB [Dictyostelium discoideum] 43 0.003
gb|AAM33182.2| similar to Plasmodium falciparum. Hypothetical pr... 42 0.005
gb|AAO52392.1| similar to Dictyostelium discoideum (Slime mold).... 42 0.005
>gb|AAM33177.2| similar to Plasmodium falciparum (isolate 3D7). Hypothetical
protein [Dictyostelium discoideum]
Length = 911
Score = 46.6 bits (109), Expect = 2e-04
Identities = 30/110 (27%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 81 ERRTKNKIKPPKENKTNSSKHKTATIKTILKQPGSERKKTRQGSNADLGQLQ-QQQHTID 257
++ K KIK K+ KTN+SK K + K K P + + +D+ + Q +Q+ ID
Sbjct: 381 DKEKKEKIKKDKQVKTNTSKKKVSQTK---KDPLLDENGNTIDNTSDIDESQLEQEFKID 437
Query: 258 SQGDQEKRSFTSTSTENAARLARGRTGDAATRKNNTETSSNKGENQKNSS 407
++ + K+S +S+S+++ ++ ++ D+ K N +T N G++ N +
Sbjct: 438 TKIKKSKKSSSSSSSKSKSKSSKKLKEDSEIVKENEDTKEN-GDDDNNEN 486
>sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdSpc97)
gi|15072754|emb|CAC47949.1| Spc97 protein [Dictyostelium
discoideum]
Length = 1177
Score = 35.0 bits (79), Expect(2) = 9e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQN 460
Q+Q QQQQ+ + ++QQQQ + + Q Q+Q+Q QN
Sbjct: 1034 QQQQQQQQQQQQQQQQQQQQQQQQQKQNQIQQQKQN 1069
Score = 35.0 bits (79), Expect = 0.72
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQ 457
Q+Q QQQQ+ + ++QQQQ + + Q Q QKQNQ
Sbjct: 1028 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQNQ 1062
Score = 34.7 bits (78), Expect = 0.94
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQ 457
Q+Q QQQQ+ + ++QQQQ + + Q Q QKQNQ
Sbjct: 1036 QQQQQQQQQQQQQQQQQQQQQQQKQNQIQQQKQNQ 1070
Score = 33.5 bits (75), Expect = 2.1
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQN 460
Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q QN
Sbjct: 1026 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQN 1061
Score = 32.3 bits (72), Expect = 4.7
Identities = 17/43 (39%), Positives = 25/43 (57%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIKPN 481
Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q Q K N
Sbjct: 1019 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQN 1061
Score = 32.3 bits (72), Expect = 4.7
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*Q-----LQKQNQNSCTIKPNCLSKTTAL 505
Q+Q QQQQ+ + ++QQQQ ++++Q Q Q+Q Q+ + P+ S TAL
Sbjct: 1038 QQQQQQQQQQQQQQQQQQQQQKQNQIQQQKQNQIQQQQQQSRGSTLPSNFSFQTAL 1093
Score = 31.6 bits (70), Expect = 8.0
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIK 475
Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q Q I+
Sbjct: 1024 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQNQIQ 1064
Score = 28.9 bits (63), Expect(2) = 9e-04
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 117 ENKTNSSKHKTATIKTILKQPGSERKKTRQGSNADLGQLQQQQHTIDSQGDQEKR 281
+NKT+SS +K+ + L+ S +++ +Q Q QQQQ Q Q+++
Sbjct: 984 KNKTSSSSNKSNNVSPPLEPRFSYQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1038
>dbj|BAB01489.1| AmiB [Dictyostelium discoideum]
Length = 2678
Score = 42.7 bits (99), Expect = 0.003
Identities = 38/132 (28%), Positives = 54/132 (40%)
Frame = +2
Query: 62 TVQNIDRKENKEQDKTTKGEQNKLQ*A*NSNNKNYTETAWIRKKKNTPRKQCRLGTATAA 241
T N ++ K Q K ++ K + N+NN N T T+ I T T TAA
Sbjct: 896 TANNEKKRHGKSQKKGRSSKRKKDDNSNNNNNNNTTTTSTITATTTTT-------TPTAA 948
Query: 242 AAHNRQPRRPRKA*LYFNQHRKCSKTS*GQNWRCCNPQKQHGNQQQQRGEPEKQQQQYGR 421
N P+ N S PQ+Q QQQQ+ + ++QQQQ +
Sbjct: 949 TTGNDNFLAPQSKPPPSNIQETSQPQSLTTVQPQPPPQQQQQQQQQQQQQQQQQQQQQQQ 1008
Query: 422 SKVQ*QLQKQNQ 457
+ Q Q Q+Q Q
Sbjct: 1009 QQQQQQQQQQQQ 1020
Score = 37.0 bits (84), Expect = 0.19
Identities = 19/45 (42%), Positives = 27/45 (59%)
Frame = +2
Query: 347 NPQKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIKPN 481
N Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q Q TI N
Sbjct: 517 NQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTINNN 561
Score = 33.9 bits (76), Expect = 1.6
Identities = 18/43 (41%), Positives = 25/43 (57%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIKPN 481
Q+Q QQQQ+ + ++QQQQ + + Q Q Q N NS I N
Sbjct: 526 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTINNNSNNISSN 568
Score = 33.1 bits (74), Expect = 2.7
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIKPNCLS 490
Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q Q + N +S
Sbjct: 521 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTINNNSNNIS 566
Score = 32.7 bits (73), Expect = 3.6
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 347 NPQKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQ 457
N Q+Q QQQQ+ + ++QQQQ + + Q Q Q+Q Q
Sbjct: 516 NNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 552
>gb|AAM33182.2| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 1485
Score = 42.4 bits (98), Expect = 0.005
Identities = 33/137 (24%), Positives = 59/137 (42%), Gaps = 7/137 (5%)
Frame = +3
Query: 87 RTKNKIKPPKENKTNSSKHKTATIKTILKQPGSERKKTRQGSNADLGQLQQQQHTIDSQG 266
+ K++I K N +++ H + +Q ++++ +Q Q QQQQ + Q
Sbjct: 259 KMKHQIDKDKHNHSHNHSHHHHHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDEQQQ 318
Query: 267 DQEKRSFTSTSTENAAR------LARG-RTGDAATRKNNTETSSNKGENQKNSSNNMAEA 425
R TS+ST NA ++ G +G+ NN ++N + N++NN
Sbjct: 319 PPIHRQSTSSSTSNATNNSDLSSMSSGISSGNILNNNNNNNNNNNNSQTTTNTNNN---- 374
Query: 426 RYSSNFKNRIRTAAQLN 476
++N N QLN
Sbjct: 375 NNNNNNNNNNNNNGQLN 391
Score = 31.6 bits (70), Expect = 8.0
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 353 QKQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNSCTIKPNCLSKTTA 502
Q+Q QQQQ+ + ++QQQQ + + Q Q Q+ Q I S +T+
Sbjct: 282 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDEQQQPPIHRQSTSSSTS 331
>gb|AAO52392.1| similar to Dictyostelium discoideum (Slime mold). Histidine kinase
A
Length = 686
Score = 42.4 bits (98), Expect = 0.005
Identities = 25/107 (23%), Positives = 43/107 (39%)
Frame = +3
Query: 129 NSSKHKTATIKTILKQPGSERKKTRQGSNADLGQLQQQQHTIDSQGDQEKRSFTSTSTEN 308
NS K K +T + K + ++ +Q + Q QQ Q I + Q+ + T N
Sbjct: 359 NSRKRKYSTKNSKQKLAQQQAQQQQQQAQQQQQQQQQAQQQIQQKQQQQSQQAQPTQMYN 418
Query: 309 AARLARGRTGDAATRKNNTETSSNKGENQKNSSNNMAEARYSSNFKN 449
+ + NN ++N N N++NN Y++N N
Sbjct: 419 SCNNSNNSYNYGNNNNNNNNNNNNNNNNNNNNNNNNNNNSYTNNSNN 465
Score = 32.7 bits (73), Expect = 3.6
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 356 KQHGNQQQQRGEPEKQQQQYGRSKVQ*QLQKQNQNS 463
+Q QQQQ+ + ++QQQQ + ++Q + Q+Q+Q +
Sbjct: 376 QQQAQQQQQQAQQQQQQQQQAQQQIQQKQQQQSQQA 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,936,223
Number of Sequences: 1393205
Number of extensions: 11631886
Number of successful extensions: 115900
Number of sequences better than 10.0: 877
Number of HSP's better than 10.0 without gapping: 56312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85924
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
