Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005714A_C01 KMC005714A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL47004.1|AF448811_1 unknown [Davidia involucrata] 59 2e-08
ref|NP_564354.1| expressed protein; protein id: At1g30360.1, sup... 30 5.7
dbj|BAB63915.1| ERD4 protein [Arabidopsis thaliana] 30 5.7
dbj|BAC05569.1| B1097D05.20 [Oryza sativa (japonica cultivar-gro... 30 7.5
ref|ZP_00066299.1| hypothetical protein [Microbulbifer degradans... 30 9.8
>gb|AAL47004.1|AF448811_1 unknown [Davidia involucrata]
Length = 226
Score = 58.9 bits (141), Expect = 2e-08
Identities = 28/34 (82%), Positives = 31/34 (90%)
Frame = -2
Query: 377 VFRSFIPPSLSSEKIEDDQFEDASSQVSRSTSFV 276
VFRSFIPPSLS+EK +DDQFEDA SQVSR+ SFV
Sbjct: 193 VFRSFIPPSLSAEKSDDDQFEDAKSQVSRAASFV 226
>ref|NP_564354.1| expressed protein; protein id: At1g30360.1, supported by cDNA:
gi_14334837, supported by cDNA: gi_17104682 [Arabidopsis
thaliana] gi|25403110|pir||H86427 unknown protein
[imported] - Arabidopsis thaliana
gi|12322128|gb|AAG51102.1|AC025295_10 unknown protein
[Arabidopsis thaliana] gi|14334838|gb|AAK59597.1|
unknown protein [Arabidopsis thaliana]
gi|17104683|gb|AAL34230.1| unknown protein [Arabidopsis
thaliana]
Length = 724
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -2
Query: 377 VFRSFIPPSLSSEKIEDDQFEDASSQ 300
+FR++IP SLSS K E+ +F+ A S+
Sbjct: 689 IFRAYIPHSLSSHKPEEHEFKGAMSR 714
>dbj|BAB63915.1| ERD4 protein [Arabidopsis thaliana]
Length = 640
Score = 30.4 bits (67), Expect = 5.7
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -2
Query: 377 VFRSFIPPSLSSEKIEDDQFEDASSQ 300
+FR++IP SLSS K E+ +F+ A S+
Sbjct: 605 IFRAYIPHSLSSHKPEEHEFKGAMSR 630
>dbj|BAC05569.1| B1097D05.20 [Oryza sativa (japonica cultivar-group)]
Length = 578
Score = 30.0 bits (66), Expect = 7.5
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 ASYQSYIINHIHKQSTLLVPK-NVLSTINKTSKSITTRLPQV 255
A Y SY+ N ++++++ +VPK L KTS +IT RL V
Sbjct: 427 APYYSYLGNCVNRKASQVVPKERYLKRKRKTSDNITVRLVMV 468
>ref|ZP_00066299.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 350
Score = 29.6 bits (65), Expect = 9.8
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 154 INHIHKQSTLLVPKNVLSTINKTSKSITTRLPQVKAS*VHQTNEVDLET*DDASSNWSSS 333
+ H+ K S V KN+ +T+ T++ I R+P + + + +EV LE + S ++
Sbjct: 243 VMHVIKSSYQNVMKNIATTVEHTAEKIQYRIPALALT---EEDEVFLEEVTNNSVYETNR 299
Query: 334 IFSE 345
IF+E
Sbjct: 300 IFNE 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,584,895
Number of Sequences: 1393205
Number of extensions: 4978523
Number of successful extensions: 11356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11351
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
