Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005711A_C02 KMC005711A_c02
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09541 transketolase (EC 2.2.1.1) TKT1 precursor, chloropla... 101 6e-21
sp|Q42676|TKTC_CRAPL TRANSKETOLASE, CHLOROPLAST (TK) gi|1084440|... 98 6e-20
dbj|BAB62078.1| transketolase [Polygonum tinctorium] 97 1e-19
pir||T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - ... 97 1e-19
pir||S58083 transketolase (EC 2.2.1.1) precursor - potato (fragm... 95 7e-19
>pir||T09541 transketolase (EC 2.2.1.1) TKT1 precursor, chloroplast [validated]
- pepper gi|3559814|emb|CAA75777.1| transketolase 1
[Capsicum annuum]
Length = 744
Score = 101 bits (252), Expect = 6e-21
Identities = 50/57 (87%), Positives = 54/57 (94%)
Frame = -3
Query: 568 ARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAQEVS 398
ARVSIEA STFGW K+VGSKGKAIGIDRFGASAPAGKIYKE+GIT EAVIAAA++VS
Sbjct: 688 ARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGKIYKEYGITAEAVIAAAKQVS 744
>sp|Q42676|TKTC_CRAPL TRANSKETOLASE, CHLOROPLAST (TK) gi|1084440|pir||S54300
transketolase (EC 2.2.1.1) 3 - Craterostigma
plantagineum (fragment) gi|664901|emb|CAA86607.1|
transketolase [Craterostigma plantagineum]
Length = 519
Score = 98.2 bits (243), Expect = 6e-20
Identities = 48/56 (85%), Positives = 53/56 (93%)
Frame = -3
Query: 568 ARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAQEV 401
ARVSIEA STFGW K+VGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+AAA+E+
Sbjct: 463 ARVSIEAGSTFGWGKIVGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518
>dbj|BAB62078.1| transketolase [Polygonum tinctorium]
Length = 620
Score = 97.1 bits (240), Expect = 1e-19
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = -3
Query: 568 ARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAQEVS 398
ARVSIEA STFGW K+VGSKGKAIGIDRFGASAPAG+IYKE+GIT EAVI AA VS
Sbjct: 564 ARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGRIYKEYGITVEAVIEAANSVS 620
>pir||T09015 transketolase (EC 2.2.1.1) precursor, chloroplast - spinach
gi|2529342|gb|AAD10219.1| transketolase [Spinacia
oleracea]
Length = 741
Score = 97.1 bits (240), Expect = 1e-19
Identities = 46/56 (82%), Positives = 52/56 (92%)
Frame = -3
Query: 568 ARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAQEV 401
ARVSIEA STFGWHK+VGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AA+ V
Sbjct: 685 ARVSIEAGSTFGWHKIVGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSV 740
>pir||S58083 transketolase (EC 2.2.1.1) precursor - potato (fragment)
Length = 694
Score = 94.7 bits (234), Expect = 7e-19
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3
Query: 568 ARVSIEAASTFGWHKLVGSKGKAIGIDRFGASAPAGKIYKEFGITKEAVIAAAQEVS 398
ARVSIEA STFGW K VG KGKAIGID FGASAPA KIYKEFGIT EAV+AAA++VS
Sbjct: 638 ARVSIEAGSTFGWQKFVGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQVS 694
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,544,511
Number of Sequences: 1393205
Number of extensions: 9768963
Number of successful extensions: 29656
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 27949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29500
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
