Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005710A_C01 KMC005710A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG17004.1|AF184144_1 ARF GAP-like zinc finger-containing pro... 65 1e-10
gb|AAM67219.1| ARF GAP-like zinc finger-containing protein ZIGA3... 65 1e-10
ref|NP_568807.1| expressed protein; protein id: At5g54310.1, sup... 65 1e-10
dbj|BAC20880.1| contains ESTs C28562(C61610),C25917(C11090)~simi... 50 6e-06
gb|EAA30838.1| predicted protein [Neurospora crassa] 34 0.47
>gb|AAG17004.1|AF184144_1 ARF GAP-like zinc finger-containing protein ZIGA3 [Arabidopsis
thaliana]
Length = 477
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/68 (52%), Positives = 43/68 (62%), Gaps = 4/68 (5%)
Frame = -2
Query: 437 AHPAGSSVQYPPSSYYTMGQVAPVNGMMTAGASKPQ--SAAPVSSTTP--QKEKEYDFSS 270
A P +++QYP SS+YTMGQ VNGM KPQ SA +STTP Q K++DFSS
Sbjct: 409 AQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSS 468
Query: 269 LTQGMFAK 246
L GMF K
Sbjct: 469 LMDGMFTK 476
>gb|AAM67219.1| ARF GAP-like zinc finger-containing protein ZIGA3 [Arabidopsis
thaliana]
Length = 483
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/68 (52%), Positives = 43/68 (62%), Gaps = 4/68 (5%)
Frame = -2
Query: 437 AHPAGSSVQYPPSSYYTMGQVAPVNGMMTAGASKPQ--SAAPVSSTTP--QKEKEYDFSS 270
A P +++QYP SS+YTMGQ VNGM KPQ SA +STTP Q K++DFSS
Sbjct: 415 AQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSS 474
Query: 269 LTQGMFAK 246
L GMF K
Sbjct: 475 LMDGMFTK 482
>ref|NP_568807.1| expressed protein; protein id: At5g54310.1, supported by cDNA:
99519., supported by cDNA: gi_20466499 [Arabidopsis
thaliana] gi|9759504|dbj|BAB10754.1|
gene_id:MDK4.13~unknown protein [Arabidopsis thaliana]
gi|20466500|gb|AAM20567.1| unknown protein [Arabidopsis
thaliana] gi|23198158|gb|AAN15606.1| unknown protein
[Arabidopsis thaliana]
Length = 483
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/68 (52%), Positives = 43/68 (62%), Gaps = 4/68 (5%)
Frame = -2
Query: 437 AHPAGSSVQYPPSSYYTMGQVAPVNGMMTAGASKPQ--SAAPVSSTTP--QKEKEYDFSS 270
A P +++QYP SS+YTMGQ VNGM KPQ SA +STTP Q K++DFSS
Sbjct: 415 AQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSS 474
Query: 269 LTQGMFAK 246
L GMF K
Sbjct: 475 LMDGMFTK 482
>dbj|BAC20880.1| contains ESTs C28562(C61610),C25917(C11090)~similar to ARF GAP-like
zinc finger-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 476
Score = 50.1 bits (118), Expect = 6e-06
Identities = 29/55 (52%), Positives = 37/55 (66%), Gaps = 1/55 (1%)
Frame = -2
Query: 404 PSSYYTMGQVAPVNGMMTAGASKPQSAAPVSSTTP-QKEKEYDFSSLTQGMFAKQ 243
P +Y T V P NG +A A+K S +P SS+ P Q KEYDFSSLTQG+F+K+
Sbjct: 425 PGAYNTSSSV-PANGAASAAANK--STSPTSSSLPSQSGKEYDFSSLTQGLFSKR 476
>gb|EAA30838.1| predicted protein [Neurospora crassa]
Length = 307
Score = 33.9 bits (76), Expect = 0.47
Identities = 20/49 (40%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Frame = -2
Query: 443 TSAHPAGSSVQYPPSSYYTMGQVAPVNGMMTAG-ASKPQSAAPVSSTTP 300
TSA PA S PP+S G AP + + +A S P AA S+T P
Sbjct: 107 TSAAPANSDAAAPPASTTVPGSSAPASAVPSAAPTSVPTDAAATSATAP 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,953,048
Number of Sequences: 1393205
Number of extensions: 7733659
Number of successful extensions: 20345
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 19704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20329
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
