>KMC005708A_C01 KMC005708A_c01
GGCGCTGGAAAATCTGAATAAATTTATGTCAGCTGAACGTACAATTCACAAAGTAGTATT
TCAACCTTGATATGAACATCTCTAACATGATAGTACAAGAATTACAAGACCTTAAAGGTA
TAAACTTGAAAACCGCTTATAGAAAACCTTTGTCCCTGCAGTCTCAAGCTGTAGTCTGCC
CACATAAGATAAAAGCTTGTATTAGGCATTGAGCAGCGTTAATTTGATCAGGTGCTCCAG
ATACACTGACCAGACCTTCGGTGGCTCCAGCCTTTGGATCATGAACCACAACGTTTGCAC
CAGATATCTGTCTAATGTCAATTAAGTTACTATTGTTCTCCCCATACACGTGGCTTAAAT
ACATATGAGGGATGGTGATCTCAACGGTCGAGCTAGTAGCATTCTGTAAGGGGTTTCCAT
TGTTTCCAGGAGTCCCAGTTCTTGATGACAAACTAGAAGTATCAGCTGTCCCTCCTGGAT
TTCCTCTTTGCACTGCCAGAGGATTCCATGATCTAGGAGAATTTGGTCCTTCATAACCAC
GAGGATAGGGAACTCGATCCATGTTTGGTGGTGCTGGAGGGGGTGGTGGGGC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005708A_C01 KMC005708A_c01
         (592 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Ara...   130  2e-29
gb|AAO37828.1| HEN4 [Arabidopsis thaliana]                             88  7e-17
ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Ara...    88  7e-17
gb|AAM92828.1| putative RNA-binding protein [Oryza sativa (japon...    75  8e-13
sp|Q60577|ROK_MOUSE Heterogeneous nuclear ribonucleoprotein K (h...    60  2e-08

>ref|NP_175569.1| KH domain protein; protein id: At1g51580.1 [Arabidopsis thaliana]
           gi|25405483|pir||D96554 hypothetical protein F19C24.19
           [imported] - Arabidopsis thaliana
           gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical
           protein [Arabidopsis thaliana]
           gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical
           protein; 15135-12645 [Arabidopsis thaliana]
          Length = 621

 Score =  130 bits (326), Expect = 2e-29
 Identities = 73/134 (54%), Positives = 86/134 (63%), Gaps = 2/134 (1%)
 Frame = -1

Query: 568 PNMDRVPYPRGYEGPNSPRSWNPLAVQRGNPGGTA--DTSSLSSRTGTPGNNGNPLQNAT 395
           P  DR P P G++ P SP SW P     G+PGG    D +   +    P  + NP+   T
Sbjct: 491 PGFDRPPGP-GFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSENPVM--T 547

Query: 394 SSTVEITIPHMYLSHVYGENNSNLIDIRQISGANVVVHDPKAGATEGLVSVSGAPDQINA 215
           S+ VEI IP  YL HVYGEN SNL  I+Q+SGANVVVHDPKAG TEGLV VSG  DQ + 
Sbjct: 548 SANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHF 607

Query: 214 AQCLIQAFILCGQT 173
           AQ L+ AFILCGQ+
Sbjct: 608 AQSLLHAFILCGQS 621

>gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
          Length = 869

 Score = 88.2 bits (217), Expect = 7e-17
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
 Frame = -1

Query: 478  PGGTADTSS--LSSRTGTPGNNGNPLQNATSSTVEITIPHMYLSHVYGENNSNLIDIRQI 305
            P G +D S    S+R G    +G+     T++TVEI +P   +S VYGE   NL  +RQI
Sbjct: 757  PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQI 816

Query: 304  SGANVVVHDPKAGATEGLVSVSGAPDQINAAQCLIQAFILCGQTT 170
            SGA V++H+P  G ++ ++ +SG PDQ  AAQ L+ AFIL G+T+
Sbjct: 817  SGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 861

>ref|NP_201244.2| KH domain protein; protein id: At5g64390.1 [Arabidopsis thaliana]
          Length = 857

 Score = 88.2 bits (217), Expect = 7e-17
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
 Frame = -1

Query: 478  PGGTADTSS--LSSRTGTPGNNGNPLQNATSSTVEITIPHMYLSHVYGENNSNLIDIRQI 305
            P G +D S    S+R G    +G+     T++TVEI +P   +S VYGE   NL  +RQI
Sbjct: 745  PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQI 804

Query: 304  SGANVVVHDPKAGATEGLVSVSGAPDQINAAQCLIQAFILCGQTT 170
            SGA V++H+P  G ++ ++ +SG PDQ  AAQ L+ AFIL G+T+
Sbjct: 805  SGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 849

>gb|AAM92828.1| putative RNA-binding protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 762

 Score = 74.7 bits (182), Expect = 8e-13
 Identities = 41/95 (43%), Positives = 52/95 (54%)
 Frame = -1

Query: 472 GTADTSSLSSRTGTPGNNGNPLQNATSSTVEITIPHMYLSHVYGENNSNLIDIRQISGAN 293
           G  D   LS  TG PG +           VE  IP+ YL  V G    NL +IRQISGA 
Sbjct: 660 GREDYRRLSGLTGYPGGS-----------VEFRIPNSYLESVIGAGGVNLAEIRQISGAR 708

Query: 292 VVVHDPKAGATEGLVSVSGAPDQINAAQCLIQAFI 188
           V +H+   G++E +V + G PDQ+ AAQ L+Q FI
Sbjct: 709 VKLHEAHPGSSESIVEIQGIPDQVKAAQSLLQGFI 743

>sp|Q60577|ROK_MOUSE Heterogeneous nuclear ribonucleoprotein K (hnRNP K) (65 kDa
           phosphoprotein) gi|473912|gb|AAA21731.1| phosphoprotein
          Length = 464

 Score = 60.5 bits (145), Expect = 2e-08
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 19/149 (12%)
 Frame = -1

Query: 586 PPPPAPPNMDRVPYPR---------GYEGPNSPRSWNPLAVQRGNP----------GGTA 464
           PPPP P   D + Y R         G  G ++  +W+  A++  +P          GG+ 
Sbjct: 310 PPPPPPRGGDLMAYDRRGRPGDRYSGMVGFSADETWDS-AIETWSPSEWQMAYEPQGGSG 368

Query: 463 DTSSLSSRTGTPGNNGNPLQNATSSTVEITIPHMYLSHVYGENNSNLIDIRQISGANVVV 284
              S +   G+ G+ G P+      T ++TIP      + G+    +  IR  SGA++ +
Sbjct: 369 YDYSYAGGRGSYGDLGGPI-----ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI 423

Query: 283 HDPKAGATEGLVSVSGAPDQINAAQCLIQ 197
            +P  G+ + +++++G  DQI  AQ L+Q
Sbjct: 424 DEPLEGSEDRIITITGTQDQIQNAQYLLQ 452

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,555,732
Number of Sequences: 1393205
Number of extensions: 12589840
Number of successful extensions: 91217
Number of sequences better than 10.0: 701
Number of HSP's better than 10.0 without gapping: 48060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77103
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MWL048c12_f AV769385 1 592 2 MWM224g08_f AV768164 1 454

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