Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005706A_C01 KMC005706A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191085.1| putative protein; protein id: At3g55250.1, supp... 165 4e-40
pir||T06728 pectate lyase (EC 4.2.2.2) F28P10.100 - Arabidopsis ... 41 0.017
ref|NP_247616.1| replication initiator protein, putative (dnaA) ... 36 0.41
pir||T22514 hypothetical protein F52F12.6 - Caenorhabditis elegans 36 0.41
ref|NP_492622.1| Myelin transcription factor 1-like, C2-HC type ... 36 0.41
>ref|NP_191085.1| putative protein; protein id: At3g55250.1, supported by cDNA:
gi_20466653 [Arabidopsis thaliana]
gi|11358241|pir||T47664 hypothetical protein T26I12.130
- Arabidopsis thaliana gi|7019658|emb|CAB75759.1|
putative protein [Arabidopsis thaliana]
gi|20466654|gb|AAM20644.1| putative protein [Arabidopsis
thaliana] gi|22136462|gb|AAM91309.1| putative protein
[Arabidopsis thaliana]
Length = 277
Score = 165 bits (418), Expect = 4e-40
Identities = 84/145 (57%), Positives = 111/145 (75%)
Frame = -3
Query: 666 AIGAGLLKTEEILEGAARLRVSDDIEFEEQTFIALMNEARERRAKLKTAPPALPMEIRVQ 487
A+GAGLLK+EEILEG R+ +S+D+EFEEQ FIALM EAR+RRAKL P +PME+RV+
Sbjct: 131 AVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQRRAKLNIDAPTIPMELRVE 190
Query: 486 KALDAIYVCSFWKDPVEQEDELLLTTMLSTVFPSVQGQEIERLVKEKAEKVAAGVIDYDV 307
KAL+ IY C F + +E+EDE LL ML VFPSV+ EIER++KEKA +V G + +V
Sbjct: 191 KALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIERIIKEKATRVEEGGEEENV 250
Query: 306 PDFKLPSKEAVELQMKDLQFLRQNS 232
+LP KEA+++QMKDL+FL+Q +
Sbjct: 251 MAKRLP-KEAIQMQMKDLEFLQQQN 274
>pir||T06728 pectate lyase (EC 4.2.2.2) F28P10.100 - Arabidopsis thaliana
gi|4678301|emb|CAB41092.1| pectate lyase-like protein
[Arabidopsis thaliana]
Length = 542
Score = 40.8 bits (94), Expect = 0.017
Identities = 24/49 (48%), Positives = 33/49 (66%)
Frame = -3
Query: 420 LLTTMLSTVFPSVQGQEIERLVKEKAEKVAAGVIDYDVPDFKLPSKEAV 274
LL ML FPSV+ EIER+++EKA +VA G + +V +L SKEA+
Sbjct: 488 LLQVMLIASFPSVEKSEIERIIREKATRVAEGGEEENVMAKRL-SKEAI 535
>ref|NP_247616.1| replication initiator protein, putative (dnaA) [Methanococcus
jannaschii] gi|2496248|sp|Q58049|Y632_METJA Hypothetical
ATP-binding protein MJ0632 gi|2128418|pir||H64378
hypothetical protein MJ0632 - Methanococcus jannaschii
gi|1591343|gb|AAB98624.1| replication initiator protein,
putative (dnaA) [Methanococcus jannaschii]
Length = 363
Score = 36.2 bits (82), Expect = 0.41
Identities = 41/147 (27%), Positives = 67/147 (44%), Gaps = 15/147 (10%)
Frame = -3
Query: 639 EEILEGAARLRVSDDIEFEEQTFIALMNE-ARERRAKLKTAPPALPMEIRVQKALDAIYV 463
E +LEG + + DD F+ +T + M+ A+E L L K +D IYV
Sbjct: 208 EAMLEGRCKYILVDD--FDRETALKFMDFLAKENNINLTNEDKELIYNYVGGKPIDIIYV 265
Query: 462 CSFWKDPVEQEDELLLTTMLSTVFPSVQGQEIERL------VKEKAEKVAAGVID----- 316
+ K ++ E +LT+ML +E ++L VKE+ E++ V+D
Sbjct: 266 INEMK---YKKLEDILTSMLK--------EETQKLKYFLENVKEEDEELYKKVVDALKIF 314
Query: 315 ---YDVPDFKLPSKEAVELQMKDLQFL 244
Y++ D K+P K L K++ FL
Sbjct: 315 KDSYEIEDIKIPKKLREFLVKKNILFL 341
>pir||T22514 hypothetical protein F52F12.6 - Caenorhabditis elegans
Length = 416
Score = 36.2 bits (82), Expect = 0.41
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
Frame = +2
Query: 419 NNSSSCSTGSFQK--EQT*IASRAFWTRISIGKAGGAVFSFARLSLASFIKAMNVCSSNS 592
N + +T + QK EQT ++ + + G G F F++ SF K + + +S +
Sbjct: 97 NMTCDTTTNNAQKPTEQTATSADVVTSSVPSGLEGVPSFLFSQFMAPSFQKQLEIFTSGN 156
Query: 593 MSSETRSLAAPSKISSVL 646
M S T S +PS + SVL
Sbjct: 157 MMSATHSDTSPSDVDSVL 174
>ref|NP_492622.1| Myelin transcription factor 1-like, C2-HC type zinc finger protein
(57.1 kD) [Caenorhabditis elegans]
gi|6434299|emb|CAB05737.2| Hypothetical protein F52F12.6
[Caenorhabditis elegans]
Length = 539
Score = 36.2 bits (82), Expect = 0.41
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
Frame = +2
Query: 419 NNSSSCSTGSFQK--EQT*IASRAFWTRISIGKAGGAVFSFARLSLASFIKAMNVCSSNS 592
N + +T + QK EQT ++ + + G G F F++ SF K + + +S +
Sbjct: 97 NMTCDTTTNNAQKPTEQTATSADVVTSSVPSGLEGVPSFLFSQFMAPSFQKQLEIFTSGN 156
Query: 593 MSSETRSLAAPSKISSVL 646
M S T S +PS + SVL
Sbjct: 157 MMSATHSDTSPSDVDSVL 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,224,086
Number of Sequences: 1393205
Number of extensions: 11021850
Number of successful extensions: 27785
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 26892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27735
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
