Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005705A_C01 KMC005705A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700665.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.2
ref|XP_142305.1| similar to hypothetical protein MGC17403 [Homo ... 32 4.9
>ref|NP_700665.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495057|gb|AAN35389.1|AE014832_11 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 213
Score = 32.7 bits (73), Expect = 2.2
Identities = 17/49 (34%), Positives = 29/49 (58%)
Frame = +3
Query: 81 IKVTFKKYTEKHNKTPKSKASAINMKSNKDYHLHQNRLQATG*KKLKRR 227
IK FKKY + + K K + K+N+ +H++ N +Q +G KK K++
Sbjct: 44 IKKQFKKYNKINKKKKKINNNNNKYKTNETFHVY-NNIQESGKKKKKKK 91
>ref|XP_142305.1| similar to hypothetical protein MGC17403 [Homo sapiens] [Mus
musculus] gi|25031426|ref|XP_205346.1| similar to
hypothetical protein MGC17403 [Homo sapiens] [Mus
musculus]
Length = 386
Score = 31.6 bits (70), Expect = 4.9
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = +3
Query: 21 SDIYIWQKIHMPLVFS*KLSIKVTFKKYTEKHNKTPKSKASAINMKSNKDYHLHQNRLQA 200
++++IWQ + + + I +K+ + +SK + N+K+ +++HL QN L
Sbjct: 229 TEVHIWQNLAREI----EEHIFTLHSNNIKKYKTSIRSKVA--NLKNPRNFHLQQNFLSG 282
Query: 201 TG*KKLKRRHIADMTPLDL 257
T + R A+M+ LD+
Sbjct: 283 T----MSAREFAEMSVLDM 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,937,277
Number of Sequences: 1393205
Number of extensions: 7706009
Number of successful extensions: 16443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16436
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
