Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005704A_C01 KMC005704A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180402.1| auxin respone transcription factor; protein id:... 149 2e-35
dbj|BAB85919.1| auxin response factor 10 [Oryza sativa] 134 6e-31
gb|AAF04627.1|AF099735_1 auxin response factor 10 [Arabidopsis t... 124 1e-27
ref|NP_567841.1| transcription factor-like protein; protein id: ... 119 2e-26
gb|AAK21342.1|AC024594_6 putative transcription factor [Oryza sa... 115 4e-25
>ref|NP_180402.1| auxin respone transcription factor; protein id: At2g28350.1,
supported by cDNA: gi_12484202, supported by cDNA:
gi_13272404 [Arabidopsis thaliana]
gi|25370633|pir||G84683 hypothetical protein At2g28350
[imported] - Arabidopsis thaliana
gi|4432846|gb|AAD20695.1| unknown protein [Arabidopsis
thaliana] gi|12484203|gb|AAG54000.1|AF336919_1 auxin
response factor 10 [Arabidopsis thaliana]
gi|13272405|gb|AAK17141.1|AF325073_1 unknown protein
[Arabidopsis thaliana]
Length = 693
Score = 149 bits (377), Expect = 2e-35
Identities = 75/113 (66%), Positives = 89/113 (78%), Gaps = 1/113 (0%)
Frame = -3
Query: 559 HCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGM-ERSELLSHVLYRDSTGAVKHTGE 383
HCKVF+ESEDVGRTLDLS +GSY+ELYR+LA MF + ERS+LL+HV+YRD+ G +K G+
Sbjct: 582 HCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGD 641
Query: 382 EPFSDFMKTAKRLTILTDSAGSKDTRRVLITGTRNAERGLDASNKTGPLSIFA 224
EPFSDFMK KRLTI D G + R+ ITG R E G+DAS KTGPLSIFA
Sbjct: 642 EPFSDFMKATKRLTIKMD-IGGDNVRKTWITGIRTGENGIDASTKTGPLSIFA 693
>dbj|BAB85919.1| auxin response factor 10 [Oryza sativa]
Length = 700
Score = 134 bits (338), Expect = 6e-31
Identities = 62/85 (72%), Positives = 76/85 (88%)
Frame = -3
Query: 559 HCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAVKHTGEE 380
HCKVF++SEDVGRTLDLS VGSYEELYRRLA+MFG+E++EL+SHV YRD+ GA+KHTG+E
Sbjct: 616 HCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDE 675
Query: 379 PFSDFMKTAKRLTILTDSAGSKDTR 305
PFS+F KTA+RL ILTD++G R
Sbjct: 676 PFSEFTKTARRLNILTDTSGDNLAR 700
>gb|AAF04627.1|AF099735_1 auxin response factor 10 [Arabidopsis thaliana]
Length = 701
Score = 124 bits (310), Expect = 1e-27
Identities = 63/108 (58%), Positives = 78/108 (71%), Gaps = 1/108 (0%)
Frame = -3
Query: 559 HCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGM-ERSELLSHVLYRDSTGAVKHTGE 383
HCKVF+ESEDVGRTLDLS +GS +ELYR+LA MF + ER +L++HV YRD+ G +K G+
Sbjct: 583 HCKVFMESEDVGRTLDLSVIGSVQELYRKLAEMFHIEERPDLVTHVGYRDANGVIKRIGD 642
Query: 382 EPFSDFMKTAKRLTILTDSAGSKDTRRVLITGTRNAERGLDASNKTGP 239
EPFSDFMK KRLTI D G + R+ ITG R E G+DA + P
Sbjct: 643 EPFSDFMKATKRLTIKMD-IGGDNVRKTWITGIRTGENGIDALRRLVP 689
>ref|NP_567841.1| transcription factor-like protein; protein id: At4g30080.1,
supported by cDNA: gi_16604694, supported by cDNA:
gi_20259588 [Arabidopsis thaliana]
gi|16604695|gb|AAL24140.1| putative transcription factor
[Arabidopsis thaliana] gi|20259589|gb|AAM14137.1|
putative transcription factor [Arabidopsis thaliana]
Length = 670
Score = 119 bits (299), Expect = 2e-26
Identities = 54/77 (70%), Positives = 72/77 (93%)
Frame = -3
Query: 559 HCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAVKHTGEE 380
HCKVF+ES+DVGRTLDLS +GSYEEL R+L++MFG+++SE+LS VLYRD++GA+K+ G E
Sbjct: 586 HCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNE 645
Query: 379 PFSDFMKTAKRLTILTD 329
PFS+F+KTA+RLTILT+
Sbjct: 646 PFSEFLKTARRLTILTE 662
>gb|AAK21342.1|AC024594_6 putative transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 698
Score = 115 bits (288), Expect = 4e-25
Identities = 52/75 (69%), Positives = 65/75 (86%)
Frame = -3
Query: 559 HCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAVKHTGEE 380
HCKVF+ESEDVGRT+DLS GSYEELY RLA+MFG+E+ E+++H+ +RD+ G VKH GE
Sbjct: 605 HCKVFMESEDVGRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAAGVVKHPGEV 664
Query: 379 PFSDFMKTAKRLTIL 335
PFSDFMK A+RLTI+
Sbjct: 665 PFSDFMKAARRLTII 679
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,660,169
Number of Sequences: 1393205
Number of extensions: 9301091
Number of successful extensions: 28475
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 27743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28434
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
