Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005700A_C01 KMC005700A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis ... 108 5e-23
ref|NP_192962.1| nucleotide sugar epimerase -like protein; prote... 108 5e-23
ref|NP_191922.1| putative nucleotide sugar epimerase; protein id... 103 2e-21
ref|NP_182056.1| putative nucleotide sugar epimerase; protein id... 102 4e-21
gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis... 101 8e-21
>gb|AAK93670.1| putative nucleotide sugar epimerase [Arabidopsis thaliana]
Length = 436
Score = 108 bits (271), Expect = 5e-23
Identities = 49/74 (66%), Positives = 60/74 (80%)
Frame = -2
Query: 657 SELVSILEKLLKVKAKRKVXPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRW 478
++LV+ILEKLLK+KAK+K+ P+PRNGDV FTHANI+ AQ ELGY P DL TGLKKFV+W
Sbjct: 363 TKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKW 422
Query: 477 YIDFYSPSNYKGPW 436
Y+ FY+ S K W
Sbjct: 423 YMGFYTGSKKKSSW 436
>ref|NP_192962.1| nucleotide sugar epimerase -like protein; protein id: At4g12250.1,
supported by cDNA: gi_15293118 [Arabidopsis thaliana]
gi|11358591|pir||T48135 nucleotide sugar epimerase-like
protein - Arabidopsis thaliana
gi|5281036|emb|CAB45972.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|7267926|emb|CAB78268.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|23297355|gb|AAN12948.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 436
Score = 108 bits (271), Expect = 5e-23
Identities = 49/74 (66%), Positives = 60/74 (80%)
Frame = -2
Query: 657 SELVSILEKLLKVKAKRKVXPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRW 478
++LV+ILEKLLK+KAK+K+ P+PRNGDV FTHANI+ AQ ELGY P DL TGLKKFV+W
Sbjct: 363 TKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKW 422
Query: 477 YIDFYSPSNYKGPW 436
Y+ FY+ S K W
Sbjct: 423 YMGFYTGSKKKSSW 436
>ref|NP_191922.1| putative nucleotide sugar epimerase; protein id: At4g00110.1
[Arabidopsis thaliana] gi|7486537|pir||T01339
hypothetical protein F6N15.16 - Arabidopsis thaliana
gi|3193316|gb|AAC19298.1| contains similarity to
nucleotide sugar epimerases [Arabidopsis thaliana]
gi|7267098|emb|CAB80769.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 430
Score = 103 bits (257), Expect = 2e-21
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = -2
Query: 657 SELVSILEKLLKVKAKRKVXPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRW 478
++LV+ILE+LLKVKAKR + +PRNGDV+FTHANIS AQ ELGY PTTDL TGLKKF RW
Sbjct: 358 TDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARW 417
Query: 477 YIDFYS 460
Y+ +Y+
Sbjct: 418 YLGYYN 423
>ref|NP_182056.1| putative nucleotide sugar epimerase; protein id: At2g45310.1
[Arabidopsis thaliana] gi|25408944|pir||A84889 probable
nucleotide sugar epimerase [imported] - Arabidopsis
thaliana gi|2583123|gb|AAB82632.1| putative nucleotide
sugar epimerase [Arabidopsis thaliana]
gi|28393645|gb|AAO42241.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
gi|28973495|gb|AAO64072.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 437
Score = 102 bits (254), Expect = 4e-21
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = -2
Query: 657 SELVSILEKLLKVKAKRKVXPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRW 478
S+LV ILE+ LKVKAK+ + MPRNGDV FTHANIS AQ ELGY PTTDL TGLKKFVRW
Sbjct: 364 SDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRW 423
Query: 477 YIDFYS 460
Y+ +YS
Sbjct: 424 YLSYYS 429
>gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis thaliana]
Length = 419
Score = 101 bits (252), Expect = 8e-21
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2
Query: 657 SELVSILEKLLKVKAKRKVXPMPRNGDVRFTHANISRAQGELGYMPTTDLATGLKKFVRW 478
++LVSILE+LLKVKAKR + +PRNGDV FTHANIS AQ E GY P+TDL TGLKKFVRW
Sbjct: 344 TDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRW 403
Query: 477 YIDFYSPSNYK 445
Y+ +Y K
Sbjct: 404 YLGYYKQGGKK 414
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,222,943
Number of Sequences: 1393205
Number of extensions: 12055865
Number of successful extensions: 42557
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 41545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42547
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
