Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005697A_C01 KMC005697A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42777|MCCA_SOYBN Methylcrotonyl-CoA carboxylase alpha chain,... 105 5e-22
gb|AAA53140.1| 3-methylcrotonyl-CoA carboxylase, biotin-carrier ... 105 5e-22
ref|NP_563674.1| putative 3-methylcrotonyl-CoA carboxylase; prot... 94 2e-18
gb|AAA67356.1| 3-methylcrotonyl-CoA carboxylase precursor 94 2e-18
pir||G86161 hypothetical protein F10O3.9 [imported] - Arabidopsi... 94 2e-18
>sp|Q42777|MCCA_SOYBN Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial precursor
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) gi|11272751|pir||T06360
methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) biotin
carboxylase chain - soybean
Length = 731
Score = 105 bits (262), Expect = 5e-22
Identities = 52/63 (82%), Positives = 58/63 (91%)
Frame = -2
Query: 653 GLVVKVLSKNEARVEVGQPVLVLEAMKMEHIVKAPSSGFVHGLQVKVGEQVSDGSALFNV 474
GLVVKVL +N+ RVE GQPVLVLEAMKMEH+VKAPSSG+VHGLQ+ VGEQVSDGS LF+V
Sbjct: 669 GLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSV 728
Query: 473 KDQ 465
KDQ
Sbjct: 729 KDQ 731
>gb|AAA53140.1| 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain
Length = 674
Score = 105 bits (262), Expect = 5e-22
Identities = 52/63 (82%), Positives = 58/63 (91%)
Frame = -2
Query: 653 GLVVKVLSKNEARVEVGQPVLVLEAMKMEHIVKAPSSGFVHGLQVKVGEQVSDGSALFNV 474
GLVVKVL +N+ RVE GQPVLVLEAMKMEH+VKAPSSG+VHGLQ+ VGEQVSDGS LF+V
Sbjct: 612 GLVVKVLVENKTRVEEGQPVLVLEAMKMEHVVKAPSSGYVHGLQLMVGEQVSDGSVLFSV 671
Query: 473 KDQ 465
KDQ
Sbjct: 672 KDQ 674
>ref|NP_563674.1| putative 3-methylcrotonyl-CoA carboxylase; protein id: At1g03090.1,
supported by cDNA: gi_533706 [Arabidopsis thaliana]
Length = 714
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/61 (73%), Positives = 54/61 (87%)
Frame = -2
Query: 653 GLVVKVLSKNEARVEVGQPVLVLEAMKMEHIVKAPSSGFVHGLQVKVGEQVSDGSALFNV 474
GLVVKVL +NEA+V+ GQP+LVLEAMKMEH+VKAPSSG + L+VK G+QVSDGSALF +
Sbjct: 653 GLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRI 712
Query: 473 K 471
K
Sbjct: 713 K 713
>gb|AAA67356.1| 3-methylcrotonyl-CoA carboxylase precursor
Length = 715
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/61 (73%), Positives = 54/61 (87%)
Frame = -2
Query: 653 GLVVKVLSKNEARVEVGQPVLVLEAMKMEHIVKAPSSGFVHGLQVKVGEQVSDGSALFNV 474
GLVVKVL +NEA+V+ GQP+LVLEAMKMEH+VKAPSSG + L+VK G+QVSDGSALF +
Sbjct: 654 GLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRI 713
Query: 473 K 471
K
Sbjct: 714 K 714
>pir||G86161 hypothetical protein F10O3.9 [imported] - Arabidopsis thaliana
gi|4587569|gb|AAD25800.1|AC006550_8 Identical to
gb|U12536 3-methylcrotonyl-CoA carboxylase precursor
protein from Arabidopsis thaliana. ESTs gb|H35836,
gb|AA651295 and gb|AA721862 come from this gene
Length = 730
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/61 (73%), Positives = 54/61 (87%)
Frame = -2
Query: 653 GLVVKVLSKNEARVEVGQPVLVLEAMKMEHIVKAPSSGFVHGLQVKVGEQVSDGSALFNV 474
GLVVKVL +NEA+V+ GQP+LVLEAMKMEH+VKAPSSG + L+VK G+QVSDGSALF +
Sbjct: 669 GLVVKVLVENEAKVDQGQPILVLEAMKMEHVVKAPSSGSIQDLKVKAGQQVSDGSALFRI 728
Query: 473 K 471
K
Sbjct: 729 K 729
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,349,749
Number of Sequences: 1393205
Number of extensions: 11779593
Number of successful extensions: 25153
Number of sequences better than 10.0: 335
Number of HSP's better than 10.0 without gapping: 24388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25136
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
