Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005696A_C01 KMC005696A_c01
(706 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46280|EFT2_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR... 212 5e-54
sp|Q43467|EFT1_SOYBN Elongation factor Tu, chloroplast precursor... 211 6e-54
gb|AAN31832.1| putative chloroplast translation elongation facto... 209 3e-53
ref|NP_193769.1| elongation factor Tu, chloroplast precursor (EF... 209 3e-53
emb|CAA75382.1| translation elongation factor-TU [Glycine max] 208 5e-53
>sp|P46280|EFT2_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR (EF-TU)
gi|2119915|pir||S60659 translation elongation factor
EF-Tu precursor, chloroplast - soybean
gi|949873|emb|CAA61444.1| EF-Tu protein [Glycine max]
Length = 479
Score = 212 bits (539), Expect = 5e-54
Identities = 103/107 (96%), Positives = 105/107 (97%)
Frame = -2
Query: 705 DIQRGMFLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 526
DIQRGM LAKPGTITPHTKFSAIVYVLKKEEGGRHSPFF+GYRPQFYMRTTDVTGKVT I
Sbjct: 366 DIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEI 425
Query: 525 MNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 385
MNDKDEESKMVMPGDRVK+VVELIVPVACEQGMRFAIREGGKTVGAG
Sbjct: 426 MNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIREGGKTVGAG 472
>sp|Q43467|EFT1_SOYBN Elongation factor Tu, chloroplast precursor (EF-Tu)
gi|99903|pir||S21567 translation elongation factor EF-Tu
precursor - soybean chloroplast gi|18776|emb|CAA46864.1|
EF-Tu [Glycine max] gi|448921|prf||1918220A elongation
factor Tu
Length = 479
Score = 211 bits (538), Expect = 6e-54
Identities = 103/107 (96%), Positives = 105/107 (97%)
Frame = -2
Query: 705 DIQRGMFLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 526
DIQRGM LAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVT+I
Sbjct: 366 DIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSI 425
Query: 525 MNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 385
MNDKDEES MV+PGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG
Sbjct: 426 MNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 472
>gb|AAN31832.1| putative chloroplast translation elongation factor EF-Tu precursor
[Arabidopsis thaliana]
Length = 476
Score = 209 bits (532), Expect = 3e-53
Identities = 101/107 (94%), Positives = 104/107 (96%)
Frame = -2
Query: 705 DIQRGMFLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 526
DIQRGM LAKPG+ITPHTKF AI+YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVT I
Sbjct: 363 DIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTKI 422
Query: 525 MNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 385
MNDKDEESKMVMPGDRVK+VVELIVPVACEQGMRFAIREGGKTVGAG
Sbjct: 423 MNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIREGGKTVGAG 469
>ref|NP_193769.1| elongation factor Tu, chloroplast precursor (EF-Tu); protein id:
At4g20360.1, supported by cDNA: gi_15294275, supported
by cDNA: gi_16930510, supported by cDNA: gi_18377802
[Arabidopsis thaliana] gi|119194|sp|P17745|EFTU_ARATH
Elongation factor Tu, chloroplast precursor (EF-Tu)
gi|81607|pir||S09152 translation elongation factor EF-Tu
precursor, chloroplast - Arabidopsis thaliana
gi|22565|emb|CAA36498.1| elongation factor Tu precursor
[Arabidopsis thaliana] gi|5738381|emb|CAB45802.2|
translation elongation factor EF-Tu precursor,
chloroplast [Arabidopsis thaliana]
gi|7268831|emb|CAB79036.1| translation elongation factor
EF-Tu precursor, chloroplast [Arabidopsis thaliana]
gi|15294276|gb|AAK95315.1|AF410329_1 AT4g20360/F9F13_10
[Arabidopsis thaliana]
gi|16930511|gb|AAL31941.1|AF419609_1 AT4g20360/F9F13_10
[Arabidopsis thaliana] gi|18377803|gb|AAL67051.1|
putative translation elongation factor EF-Tu precursor,
chloroplast [Arabidopsis thaliana]
gi|23397118|gb|AAN31843.1| putative chloroplast
translation elongation factor EF-Tu precursor
[Arabidopsis thaliana] gi|24030503|gb|AAN41398.1|
putative translation elongation factor EF-Tu precursor,
chloroplast [Arabidopsis thaliana]
gi|27363278|gb|AAO11558.1| At4g20360/F9F13_10
[Arabidopsis thaliana] gi|226817|prf||1607332A
elongation factor Tu
Length = 476
Score = 209 bits (532), Expect = 3e-53
Identities = 101/107 (94%), Positives = 104/107 (96%)
Frame = -2
Query: 705 DIQRGMFLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 526
DIQRGM LAKPG+ITPHTKF AI+YVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVT I
Sbjct: 363 DIQRGMVLAKPGSITPHTKFEAIIYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTKI 422
Query: 525 MNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 385
MNDKDEESKMVMPGDRVK+VVELIVPVACEQGMRFAIREGGKTVGAG
Sbjct: 423 MNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIREGGKTVGAG 469
>emb|CAA75382.1| translation elongation factor-TU [Glycine max]
Length = 346
Score = 208 bits (530), Expect = 5e-53
Identities = 102/107 (95%), Positives = 104/107 (96%)
Frame = -2
Query: 705 DIQRGMFLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 526
DIQRGM LAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI
Sbjct: 233 DIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAI 292
Query: 525 MNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 385
ND+DEES+MVMPG RVKMVVELIVPVACEQGMRFAIREGGKTVGAG
Sbjct: 293 TNDRDEESQMVMPGXRVKMVVELIVPVACEQGMRFAIREGGKTVGAG 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,848,049
Number of Sequences: 1393205
Number of extensions: 12750968
Number of successful extensions: 34946
Number of sequences better than 10.0: 595
Number of HSP's better than 10.0 without gapping: 32667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34500
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
