Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005695A_C01 KMC005695A_c01
(249 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.... 34 0.62
ref|NP_066517.1| ATP synthase F0 subunit 8 [Naegleria gruberi] g... 30 8.9
>pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 3,
kinetoplast - Trypanosoma brucei mitochondrion
(fragment) gi|468424|gb|AAA20887.1| CR5
Length = 150
Score = 33.9 bits (76), Expect = 0.62
Identities = 21/48 (43%), Positives = 27/48 (55%)
Frame = -2
Query: 215 YLFLWQVASFVTCHEFML*FYFTEHVMLCGLKL*CLRGHDLYVAVLSN 72
+LFLW + FV C F+ +YF +HV LCG+ L CL LY N
Sbjct: 102 FLFLWFLF-FVVCIGFV--WYFWDHVYLCGVILFCLWCFLLYYTYYIN 146
>ref|NP_066517.1| ATP synthase F0 subunit 8 [Naegleria gruberi]
gi|10444229|gb|AAG17795.1|AF288092_20 ATP synthase F0
subunit 8 [Naegleria gruberi]
Length = 110
Score = 30.0 bits (66), Expect = 8.9
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 247 FAFTVAVLLPVTFFFGKLHHLLLVMNLCFSFTSQNML 137
+ F V +LP+ FF KL H L+V NL + + NML
Sbjct: 23 YFFFVKYILPLISFFFKLKHKLIVSNLNWFNNNFNML 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,271,096
Number of Sequences: 1393205
Number of extensions: 3584678
Number of successful extensions: 8762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8761
length of database: 448,689,247
effective HSP length: 58
effective length of database: 367,883,357
effective search space used: 8829200568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
