Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005691A_C01 KMC005691A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180580.1| laccase (diphenol oxidase), putative; protein i... 133 9e-31
dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultiva... 126 1e-28
gb|AAK37829.1|AF132125_1 laccase [Pinus taeda] 125 3e-28
ref|NP_196330.1| laccase (diphenol oxidase), putative; protein i... 124 7e-28
gb|AAK37830.1|AF132126_1 laccase [Pinus taeda] 123 9e-28
>ref|NP_180580.1| laccase (diphenol oxidase), putative; protein id: At2g30210.1
[Arabidopsis thaliana] gi|7432995|pir||T00579 probable
laccase [imported] - Arabidopsis thaliana
gi|2347188|gb|AAC16927.1| putative laccase [Arabidopsis
thaliana] gi|20197103|gb|AAM14916.1| putative laccase
[Arabidopsis thaliana]
Length = 570
Score = 133 bits (335), Expect = 9e-31
Identities = 59/75 (78%), Positives = 62/75 (82%)
Frame = -1
Query: 484 PARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVG 305
PARFNL DPP +NTIGTPPGGWVAIRFVADNPG WF+HCHIDSHL WGLA LVENG G
Sbjct: 496 PARFNLFDPPERNTIGTPPGGWVAIRFVADNPGAWFMHCHIDSHLGWGLAMVFLVENGRG 555
Query: 304 PSQSVIPPPPDLPQC 260
QSV PP DLP+C
Sbjct: 556 QLQSVQAPPLDLPRC 570
>dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultivar-group)]
Length = 562
Score = 126 bits (316), Expect = 1e-28
Identities = 50/75 (66%), Positives = 62/75 (82%)
Frame = -1
Query: 484 PARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVG 305
PA++NLVDPP +NT+G P GGW AIRF ADNPG+WFLHCH++ H +WGL A LVE+G G
Sbjct: 488 PAKYNLVDPPERNTVGVPAGGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFLVEDGSG 547
Query: 304 PSQSVIPPPPDLPQC 260
P +SV+PPP DLP+C
Sbjct: 548 PDESVLPPPKDLPKC 562
>gb|AAK37829.1|AF132125_1 laccase [Pinus taeda]
Length = 555
Score = 125 bits (313), Expect = 3e-28
Identities = 50/75 (66%), Positives = 59/75 (78%)
Frame = -1
Query: 484 PARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVG 305
PA+FNLVDPP +NT+G P GGW IRF ADNPG+WF+HCH++ H WGL A LVENG G
Sbjct: 481 PAKFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHG 540
Query: 304 PSQSVIPPPPDLPQC 260
P QS++PP DLPQC
Sbjct: 541 PEQSILPPGKDLPQC 555
>ref|NP_196330.1| laccase (diphenol oxidase), putative; protein id: At5g07130.1
[Arabidopsis thaliana] gi|11255522|pir||T48484
laccase-like protein - Arabidopsis thaliana
gi|7546691|emb|CAB87269.1| laccase-like protein
[Arabidopsis thaliana]
Length = 569
Score = 124 bits (310), Expect = 7e-28
Identities = 54/72 (75%), Positives = 59/72 (81%)
Frame = -1
Query: 475 FNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVGPSQ 296
FNL+DPP +NTIGTPPGGWVAIRFVA+NPG W +HCHIDSH+ WGLA LVENG G Q
Sbjct: 498 FNLIDPPRRNTIGTPPGGWVAIRFVANNPGAWLMHCHIDSHIFWGLAMVFLVENGEGHLQ 557
Query: 295 SVIPPPPDLPQC 260
SV PP DLPQC
Sbjct: 558 SVQSPPLDLPQC 569
>gb|AAK37830.1|AF132126_1 laccase [Pinus taeda]
Length = 577
Score = 123 bits (309), Expect = 9e-28
Identities = 49/75 (65%), Positives = 58/75 (77%)
Frame = -1
Query: 484 PARFNLVDPPVKNTIGTPPGGWVAIRFVADNPGIWFLHCHIDSHLNWGLATALLVENGVG 305
PA FNLVDPP +NT+G P GGW IRF ADNPG+WF+HCH++ H WGL A LVENG G
Sbjct: 503 PASFNLVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGDG 562
Query: 304 PSQSVIPPPPDLPQC 260
P QS++PPP D P+C
Sbjct: 563 PDQSMLPPPSDFPKC 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,346,573
Number of Sequences: 1393205
Number of extensions: 10400879
Number of successful extensions: 36723
Number of sequences better than 10.0: 379
Number of HSP's better than 10.0 without gapping: 34210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36689
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
