Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005685A_C01 KMC005685A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF30313.1|AC018907_13 putative guanylate kinase [Arabidopsis... 44 0.001
ref|NP_566276.1| putative guanylate kinase; protein id: At3g0620... 44 0.001
>gb|AAF30313.1|AC018907_13 putative guanylate kinase [Arabidopsis thaliana]
Length = 240
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -1
Query: 561 VVNAKGKLENAVKLVDSIIDAEKAKVRQR 475
VVNAKG+L++AV V+SIIDAEK+KV QR
Sbjct: 208 VVNAKGRLDDAVNRVESIIDAEKSKVHQR 236
>ref|NP_566276.1| putative guanylate kinase; protein id: At3g06200.1, supported by
cDNA: gi_14190398, supported by cDNA: gi_17386097
[Arabidopsis thaliana]
gi|14190399|gb|AAK55680.1|AF378877_1 AT3g06200/F28L1_14
[Arabidopsis thaliana]
gi|17386098|gb|AAL38595.1|AF446862_1 AT3g06200/F28L1_14
[Arabidopsis thaliana]
Length = 282
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/29 (72%), Positives = 26/29 (89%)
Frame = -1
Query: 561 VVNAKGKLENAVKLVDSIIDAEKAKVRQR 475
VVNAKG+L++AV V+SIIDAEK+KV QR
Sbjct: 250 VVNAKGRLDDAVNRVESIIDAEKSKVHQR 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,268,261
Number of Sequences: 1393205
Number of extensions: 7365422
Number of successful extensions: 16908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16905
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
