Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005680A_C01 KMC005680A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O33600|RA50_SULAC DNA double-strand break repair rad50 ATPase... 44 0.002
ref|NP_177964.1| hypothetical protein; protein id: At1g78430.1 [... 42 0.007
ref|NP_663211.1| hypothetical protein [Phthorimaea operculella g... 41 0.010
ref|XP_228197.1| similar to mKIAA0336 protein [Mus musculus] [Ra... 41 0.010
gb|AAF68102.1|AF255549_1 PspA [Streptococcus pneumoniae] 41 0.010
>sp|O33600|RA50_SULAC DNA double-strand break repair rad50 ATPase
gi|2293014|emb|CAA71688.1| purine NTPase [Sulfolobus
acidocaldarius] gi|21388537|emb|CAD26845.1| Rad50
protein [Sulfolobus acidocaldarius]
Length = 886
Score = 43.5 bits (101), Expect = 0.002
Identities = 29/117 (24%), Positives = 54/117 (45%)
Frame = -3
Query: 566 PLTQTIQDYDQLLQSRSSMTDPSRSVKVXPDPIKAKVTELKMKIENINSEIGEREQESSV 387
P+ I+ ++S S+ D + + D +K ++ E+K+K+ENI E E+E E +
Sbjct: 169 PIHSLIKVLTDRIRSLQSIKDILKREEAEIDRLKKEIEEIKVKLENIEREAKEKEDELNQ 228
Query: 386 LDEAREKLKRELDHYDAESSKLKIQVAQWLPECKTIFTDLKNSEPDYELAVTNTKKI 216
+ ++K YD S +L + V + + E D + E Y T K++
Sbjct: 229 YNTEFNRIKEIKVQYDILSGELSV-VNKKIEEIALRLKDFEEKEKRYNKIETEVKEL 284
>ref|NP_177964.1| hypothetical protein; protein id: At1g78430.1 [Arabidopsis
thaliana] gi|25405032|pir||G96812 protein F3F9.6
[imported] - Arabidopsis thaliana
gi|8052548|gb|AAF71812.1|AC013430_21 F3F9.6 [Arabidopsis
thaliana]
Length = 326
Score = 41.6 bits (96), Expect = 0.007
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = -3
Query: 575 DLQPLTQTIQDYDQLLQSRSSMTDPSRSVKVXPDPIKAKVTELKMKIENINSEIGEREQE 396
DL+ ++ + ++ L+ + TD S KAK E+ K+ I E+ E +
Sbjct: 170 DLEKERVSLSEENETLKDQLKKTDTEMSCA------KAKEDEIASKVSQIGEELEESNET 223
Query: 395 SSVLDEAREKLKRELDHYDAESSKLKIQVAQW 300
++ L + E ++ + +AE KLK+Q QW
Sbjct: 224 TAKLKKKLESVEEAKETLEAEMKKLKVQTEQW 255
>ref|NP_663211.1| hypothetical protein [Phthorimaea operculella granulovirus]
gi|21637027|gb|AAM70244.1| hypothetical protein
[Phthorimaea operculella granulovirus]
Length = 810
Score = 41.2 bits (95), Expect = 0.010
Identities = 22/79 (27%), Positives = 40/79 (49%)
Frame = -3
Query: 452 ELKMKIENINSEIGEREQESSVLDEAREKLKRELDHYDAESSKLKIQVAQWLPECKTIFT 273
+L KI +NS+I + ++ L + LKRE++ E+S LK ++ + E KT+
Sbjct: 205 QLNSKISTLNSQINDLTDQNQKLTDESSALKREIEKLTDENSALKREIEKLNDEYKTLKD 264
Query: 272 DLKNSEPDYELAVTNTKKI 216
+ K +Y+ KK+
Sbjct: 265 EYKKLSEEYKTLKDEHKKL 283
>ref|XP_228197.1| similar to mKIAA0336 protein [Mus musculus] [Rattus norvegicus]
Length = 2083
Score = 41.2 bits (95), Expect = 0.010
Identities = 29/117 (24%), Positives = 53/117 (44%)
Frame = -3
Query: 572 LQPLTQTIQDYDQLLQSRSSMTDPSRSVKVXPDPIKAKVTELKMKIENINSEIGEREQES 393
+Q L +D Q + D R +K + K+T KIE++ E+ ++Q+
Sbjct: 1426 MQELELVKKDAQQTTLMNMEIADYERLMK----ELNQKLTNKNSKIEDLEQEMKIQKQKQ 1481
Query: 392 SVLDEAREKLKRELDHYDAESSKLKIQVAQWLPECKTIFTDLKNSEPDYELAVTNTK 222
L E L+ + HY+ +++++K Q L + K D K +E D+ L + K
Sbjct: 1482 ETLQEEMTSLQSSVQHYEEKNAQIK----QLLVKTKKELADAKQAETDHLLLQASLK 1534
>gb|AAF68102.1|AF255549_1 PspA [Streptococcus pneumoniae]
Length = 246
Score = 41.2 bits (95), Expect = 0.010
Identities = 31/115 (26%), Positives = 56/115 (47%), Gaps = 9/115 (7%)
Frame = -3
Query: 563 LTQTIQDYDQLLQSRSSMTDPSRSVKVXPDPIKAKVTELK---MKIENINSEIGEREQES 393
LT+ +++ ++ + D + +V P +AK+ EL+ K+E EIGE + E
Sbjct: 9 LTKKVEEAEKKVTEAKQKVDAEHAEEVAP---QAKIAELEHEVQKLEKALKEIGESDSED 65
Query: 392 SVLDEAREKLKRELDHYDAESSKLK------IQVAQWLPECKTIFTDLKNSEPDY 246
V + R L+ ELD A+ SKL+ ++ + + + D KNS+ +Y
Sbjct: 66 YVKEGLRAPLQSELDAKQAKLSKLEELSDKIDELDAEIAKLEKDVEDFKNSDGEY 120
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,413,940
Number of Sequences: 1393205
Number of extensions: 8824933
Number of successful extensions: 31026
Number of sequences better than 10.0: 268
Number of HSP's better than 10.0 without gapping: 29058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30925
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
