Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005676A_C01 KMC005676A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC06946.1| putative GTP-binding protein [Oryza sativa (japo... 129 3e-29
ref|NP_172501.1| putative GTP-binding protein; protein id: At1g1... 115 3e-25
gb|AAD32880.1|AC005489_18 F14N23.18 [Arabidopsis thaliana] 115 3e-25
ref|NP_175505.1| GTP-binding protein, putative; protein id: At1g... 108 6e-23
sp|Q9U6A9|NOG1_TRYBB Nucleolar GTP-binding protein 1 gi|6007832|... 74 1e-12
>dbj|BAC06946.1| putative GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 676
Score = 129 bits (323), Expect = 3e-29
Identities = 68/82 (82%), Positives = 71/82 (85%), Gaps = 1/82 (1%)
Frame = -3
Query: 566 SKKLR-LSRSRSRSVSRPPNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRV 390
SKKLR LSRSRSRS SRPP EVVPGEGF+DSAQK KAIK AK SV+ RNKEARRGEADRV
Sbjct: 595 SKKLRALSRSRSRSKSRPPEEVVPGEGFKDSAQKKKAIKKAKDSVRNRNKEARRGEADRV 654
Query: 389 IPNLKPKHLYSGKRSTGKTDRR 324
IP LKPKHL+SGK S GKT RR
Sbjct: 655 IPTLKPKHLFSGKSSIGKTSRR 676
>ref|NP_172501.1| putative GTP-binding protein; protein id: At1g10300.1 [Arabidopsis
thaliana]
Length = 687
Score = 115 bits (289), Expect = 3e-25
Identities = 57/75 (76%), Positives = 65/75 (86%)
Frame = -3
Query: 548 SRSRSRSVSRPPNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRVIPNLKPK 369
S SRSRSVSRPP+EVVPGEGF+DS+QK KAIK+ KS +KR+K ARRGEADRVIP+LKPK
Sbjct: 613 SLSRSRSVSRPPHEVVPGEGFKDSSQKIKAIKIGHKSHRKRDKAARRGEADRVIPSLKPK 672
Query: 368 HLYSGKRSTGKTDRR 324
HL+SGKR GK RR
Sbjct: 673 HLFSGKRGNGKNQRR 687
>gb|AAD32880.1|AC005489_18 F14N23.18 [Arabidopsis thaliana]
Length = 626
Score = 115 bits (289), Expect = 3e-25
Identities = 57/75 (76%), Positives = 65/75 (86%)
Frame = -3
Query: 548 SRSRSRSVSRPPNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRVIPNLKPK 369
S SRSRSVSRPP+EVVPGEGF+DS+QK KAIK+ KS +KR+K ARRGEADRVIP+LKPK
Sbjct: 552 SLSRSRSVSRPPHEVVPGEGFKDSSQKIKAIKIGHKSHRKRDKAARRGEADRVIPSLKPK 611
Query: 368 HLYSGKRSTGKTDRR 324
HL+SGKR GK RR
Sbjct: 612 HLFSGKRGNGKNQRR 626
>ref|NP_175505.1| GTP-binding protein, putative; protein id: At1g50920.1 [Arabidopsis
thaliana] gi|17368724|sp|Q9C6I8|NOG1_ARATH Probable
nucleolar GTP-binding protein 1 gi|25405416|pir||C96546
probable GTP-binding protein [imported] - Arabidopsis
thaliana gi|12321793|gb|AAG50935.1|AC079284_10
GTP-binding protein, putative [Arabidopsis thaliana]
Length = 671
Score = 108 bits (269), Expect = 6e-23
Identities = 60/87 (68%), Positives = 70/87 (79%), Gaps = 6/87 (6%)
Frame = -3
Query: 566 SKKLRL-SRSR----SRSVSRPP-NEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRG 405
+KK R+ S+SR SRS SRPP +EVVPGEGF+DS QK AIK++ KS KKR+K ARRG
Sbjct: 585 NKKQRVRSKSRAMSISRSQSRPPAHEVVPGEGFKDSTQKLSAIKISNKSHKKRDKNARRG 644
Query: 404 EADRVIPNLKPKHLYSGKRSTGKTDRR 324
EADRVIP L+PKHL+SGKR GKTDRR
Sbjct: 645 EADRVIPTLRPKHLFSGKRGKGKTDRR 671
>sp|Q9U6A9|NOG1_TRYBB Nucleolar GTP-binding protein 1 gi|6007832|gb|AAF01061.1|AF189284_1
nucleolar G-protein NOG1 [Trypanosoma brucei]
Length = 655
Score = 73.9 bits (180), Expect = 1e-12
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = -3
Query: 548 SRSRSRSVSRPPNEVVPGEGFRDSAQKGKAIKLAKKSVKKRNKEARRGEADRVIPNLKPK 369
+R RS SV+R GEG+RD +K +A+KL+K + RN +A++GE DR IPNL+PK
Sbjct: 587 TRDRSLSVNR-------GEGYRDVNEKLRAVKLSKVVARPRNLQAKKGEGDRAIPNLRPK 639
Query: 368 HLYSGK-RSTGKTDRR 324
HL++GK +S G+ DRR
Sbjct: 640 HLFTGKVKSNGRRDRR 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,364,999
Number of Sequences: 1393205
Number of extensions: 9139858
Number of successful extensions: 25831
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 24707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25717
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
