Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005673A_C01 KMC005673A_c01
(787 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF89208.1|AF279251_1 NADPH-protochlorophyllide oxidoreductas... 293 3e-78
dbj|BAB93003.1| NADPH:protochlorophyllide oxidoreductase [Nicoti... 287 1e-76
pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precurso... 284 9e-76
sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast pre... 284 9e-76
sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplast p... 281 8e-75
>gb|AAF89208.1|AF279251_1 NADPH-protochlorophyllide oxidoreductase [Vigna radiata]
Length = 398
Score = 293 bits (749), Expect = 3e-78
Identities = 142/147 (96%), Positives = 144/147 (97%)
Frame = -2
Query: 786 GLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 607
GLNGLNTS+MIDGG FDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG
Sbjct: 252 GLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 311
Query: 606 LFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVGDPSLTKSGVYWSWNKDSASFE 427
LFREHIPLFRLLFPPFQK+ITKGFVSEDESGKRLAQVV DPSLTKSGVYWSWNK SASFE
Sbjct: 312 LFREHIPLFRLLFPPFQKFITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNKASASFE 371
Query: 426 NQLSQEASDADKARKVWEISEKLVGLA 346
NQLSQEASDADKARKVWEISEKLVGLA
Sbjct: 372 NQLSQEASDADKARKVWEISEKLVGLA 398
>dbj|BAB93003.1| NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum]
Length = 397
Score = 287 bits (735), Expect = 1e-76
Identities = 136/147 (92%), Positives = 144/147 (97%)
Frame = -2
Query: 786 GLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 607
GLNG+N+S+MIDGG+FDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG
Sbjct: 251 GLNGINSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 310
Query: 606 LFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVGDPSLTKSGVYWSWNKDSASFE 427
LFREHIPLFRLLFPPFQKYITKGFVSE E+GKRLAQVV DPSLTKSGVYWSWNKDSASFE
Sbjct: 311 LFREHIPLFRLLFPPFQKYITKGFVSETEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE 370
Query: 426 NQLSQEASDADKARKVWEISEKLVGLA 346
NQLS+EASD +KARKVWE+SEKLVGLA
Sbjct: 371 NQLSEEASDVEKARKVWEVSEKLVGLA 397
>pir||S20941 protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea
Length = 400
Score = 284 bits (727), Expect = 9e-76
Identities = 136/147 (92%), Positives = 142/147 (96%)
Frame = -2
Query: 786 GLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 607
GL GLN+S+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG
Sbjct: 254 GLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 313
Query: 606 LFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVGDPSLTKSGVYWSWNKDSASFE 427
LFREHIPLFR LFPPFQKYITKG+VSE+ESGKRLAQVV DPSLTKSGVYWSWN SASFE
Sbjct: 314 LFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFE 373
Query: 426 NQLSQEASDADKARKVWEISEKLVGLA 346
NQLSQEASDA+KARKVWE+SEKLVGLA
Sbjct: 374 NQLSQEASDAEKARKVWEVSEKLVGLA 400
>sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|20830|emb|CAA44786.1| protochlorophyllide reductase
[Pisum sativum]
Length = 399
Score = 284 bits (727), Expect = 9e-76
Identities = 136/147 (92%), Positives = 142/147 (96%)
Frame = -2
Query: 786 GLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 607
GL GLN+S+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG
Sbjct: 253 GLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 312
Query: 606 LFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVGDPSLTKSGVYWSWNKDSASFE 427
LFREHIPLFR LFPPFQKYITKG+VSE+ESGKRLAQVV DPSLTKSGVYWSWN SASFE
Sbjct: 313 LFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFE 372
Query: 426 NQLSQEASDADKARKVWEISEKLVGLA 346
NQLSQEASDA+KARKVWE+SEKLVGLA
Sbjct: 373 NQLSQEASDAEKARKVWEVSEKLVGLA 399
>sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplast precursor (PCR)
(NADPH-protochlorophyllide oxidoreductase) (POR)
gi|6644198|gb|AAF20949.1|AF207691_1
NADPH:protochlorophyllide oxidoreductase [Daucus carota]
Length = 398
Score = 281 bits (719), Expect = 8e-75
Identities = 133/147 (90%), Positives = 142/147 (96%)
Frame = -2
Query: 786 GLNGLNTSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 607
GLNG+N+S+MIDG +FDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG
Sbjct: 252 GLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 311
Query: 606 LFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVGDPSLTKSGVYWSWNKDSASFE 427
LFREHIPLFR LFPPFQKYITKG+VSE ESGKRLAQVV +PSLTKSGVYWSWNKDSASFE
Sbjct: 312 LFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFE 371
Query: 426 NQLSQEASDADKARKVWEISEKLVGLA 346
NQLS+EASD +KARKVWE+SEKLVGLA
Sbjct: 372 NQLSEEASDVEKARKVWEVSEKLVGLA 398
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,733,615
Number of Sequences: 1393205
Number of extensions: 15266807
Number of successful extensions: 39440
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 37990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39387
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
