Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005670A_C01 KMC005670A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata] 127 8e-29
ref|NP_192966.1| copper amine oxidase -like protein; protein id:... 123 1e-27
gb|AAN60277.1| unknown [Arabidopsis thaliana] 123 1e-27
gb|AAM98089.1| AT4g12290/T4C9_130 [Arabidopsis thaliana] gi|2841... 123 1e-27
ref|NP_192965.1| copper amine oxidase like protein (fragment2); ... 122 2e-27
>gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata]
Length = 735
Score = 127 bits (319), Expect = 8e-29
Identities = 56/71 (78%), Positives = 65/71 (90%)
Frame = -1
Query: 535 KTRVGNPLGFKLVPSATAASLLDHDDPPQKRAAFTYNQLWVTPYHKSELWAGGLFVYQSR 356
KT+VGNP+G+K+VP TAASLLD +DPPQKRAAFT NQ+WVTPY+K+E WAGGLFVYQS+
Sbjct: 596 KTKVGNPVGYKIVPGGTAASLLDAEDPPQKRAAFTNNQIWVTPYNKTEQWAGGLFVYQSK 655
Query: 355 GDDNLQVWSNR 323
GDD LQVWSNR
Sbjct: 656 GDDTLQVWSNR 666
>ref|NP_192966.1| copper amine oxidase -like protein; protein id: At4g12290.1
[Arabidopsis thaliana] gi|11279261|pir||T48139 copper
amine oxidase-like protein - Arabidopsis thaliana
gi|5281040|emb|CAB45976.1| copper amine oxidase-like
protein [Arabidopsis thaliana]
gi|7267930|emb|CAB78272.1| copper amine oxidase-like
protein [Arabidopsis thaliana]
Length = 756
Score = 123 bits (309), Expect = 1e-27
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = -1
Query: 532 TRVGNPLGFKLVPSATAASLLDHDDPPQKRAAFTYNQLWVTPYHKSELWAGGLFVYQSRG 353
TRVGNP G+K+VP TAASLLDHDDPPQKR AFT NQ+WVTPY+KSE WAGGLF YQS G
Sbjct: 617 TRVGNPTGYKVVPRTTAASLLDHDDPPQKRGAFTNNQIWVTPYNKSEQWAGGLFTYQSHG 676
Query: 352 DDNLQVWSNR 323
DD L VWS+R
Sbjct: 677 DDTLAVWSDR 686
>gb|AAN60277.1| unknown [Arabidopsis thaliana]
Length = 507
Score = 123 bits (309), Expect = 1e-27
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = -1
Query: 532 TRVGNPLGFKLVPSATAASLLDHDDPPQKRAAFTYNQLWVTPYHKSELWAGGLFVYQSRG 353
TRVGNP G+K+VP TAASLLDHDDPPQKR AFT NQ+WVTPY+KSE WAGGLF YQS G
Sbjct: 368 TRVGNPTGYKVVPRTTAASLLDHDDPPQKRGAFTNNQIWVTPYNKSEQWAGGLFTYQSHG 427
Query: 352 DDNLQVWSNR 323
DD L VWS+R
Sbjct: 428 DDTLAVWSDR 437
>gb|AAM98089.1| AT4g12290/T4C9_130 [Arabidopsis thaliana]
gi|28416507|gb|AAO42784.1| AT4g12290/T4C9_130
[Arabidopsis thaliana]
Length = 741
Score = 123 bits (309), Expect = 1e-27
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = -1
Query: 532 TRVGNPLGFKLVPSATAASLLDHDDPPQKRAAFTYNQLWVTPYHKSELWAGGLFVYQSRG 353
TRVGNP G+K+VP TAASLLDHDDPPQKR AFT NQ+WVTPY+KSE WAGGLF YQS G
Sbjct: 602 TRVGNPTGYKVVPRTTAASLLDHDDPPQKRGAFTNNQIWVTPYNKSEQWAGGLFTYQSHG 661
Query: 352 DDNLQVWSNR 323
DD L VWS+R
Sbjct: 662 DDTLAVWSDR 671
>ref|NP_192965.1| copper amine oxidase like protein (fragment2); protein id:
At4g12280.1 [Arabidopsis thaliana]
gi|11357232|pir||T48138 copper amine oxidase-like
protein, incomplete - Arabidopsis thaliana
gi|5281039|emb|CAB45975.1| copper amine oxidase like
protein (fragment2) [Arabidopsis thaliana]
gi|7267929|emb|CAB78271.1| copper amine oxidase like
protein (fragment2) [Arabidopsis thaliana]
Length = 300
Score = 122 bits (307), Expect = 2e-27
Identities = 55/70 (78%), Positives = 60/70 (85%)
Frame = -1
Query: 532 TRVGNPLGFKLVPSATAASLLDHDDPPQKRAAFTYNQLWVTPYHKSELWAGGLFVYQSRG 353
TRVGNP G+K+VP ATAASLLDHDDPPQKR AFT NQ+WVTPY+KSE WA GLF YQS G
Sbjct: 161 TRVGNPTGYKVVPRATAASLLDHDDPPQKRGAFTNNQIWVTPYNKSEQWASGLFTYQSHG 220
Query: 352 DDNLQVWSNR 323
DD L VWS+R
Sbjct: 221 DDTLAVWSDR 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,592,582
Number of Sequences: 1393205
Number of extensions: 9461715
Number of successful extensions: 21349
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 18116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20450
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
