Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005664A_C01 KMC005664A_c01
(756 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564707.2| elongation factor, putative; protein id: At1g56... 199 5e-50
pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thal... 199 5e-50
gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]... 199 5e-50
gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana] 199 5e-50
sp|O23755|EF2_BETVU Elongation factor 2 (EF-2) gi|7443464|pir||T... 195 7e-49
>ref|NP_564707.2| elongation factor, putative; protein id: At1g56075.1, supported by
cDNA: gi_13605864, supported by cDNA: gi_15450762
[Arabidopsis thaliana]
gi|13605865|gb|AAK32918.1|AF367331_1 At1g56070/T6H22_13
[Arabidopsis thaliana] gi|15450763|gb|AAK96653.1|
elongation factor EF-2 [Arabidopsis thaliana]
gi|23397045|gb|AAN31808.1| putative elongation factor
[Arabidopsis thaliana] gi|23397162|gb|AAN31864.1|
putative elongation factor [Arabidopsis thaliana]
gi|27363422|gb|AAO11630.1| At1g56070/T6H22_13
[Arabidopsis thaliana]
Length = 843
Score = 199 bits (505), Expect = 5e-50
Identities = 97/106 (91%), Positives = 101/106 (94%)
Frame = -2
Query: 755 EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 576
E ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSS LRAATSGQAFPQC
Sbjct: 738 EGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQC 797
Query: 575 VFDHWDMMSSDPLEPGSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 438
VFDHW+MMSSDPLEPG+ A+ LVADIR+RKGLKE MTPLSEFEDKL
Sbjct: 798 VFDHWEMMSSDPLEPGTQASVLVADIRKRKGLKEAMTPLSEFEDKL 843
>pir||A96602 elongation factor EF-2 [imported] - Arabidopsis thaliana
gi|6056373|gb|AAF02837.1|AC009894_8 elongation factor
EF-2 [Arabidopsis thaliana]
Length = 846
Score = 199 bits (505), Expect = 5e-50
Identities = 97/106 (91%), Positives = 101/106 (94%)
Frame = -2
Query: 755 EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 576
E ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSS LRAATSGQAFPQC
Sbjct: 741 EGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQC 800
Query: 575 VFDHWDMMSSDPLEPGSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 438
VFDHW+MMSSDPLEPG+ A+ LVADIR+RKGLKE MTPLSEFEDKL
Sbjct: 801 VFDHWEMMSSDPLEPGTQASVLVADIRKRKGLKEAMTPLSEFEDKL 846
>gb|AAK59516.1| putative elongation factor [Arabidopsis thaliana]
gi|17104671|gb|AAL34224.1| putative elongation factor
[Arabidopsis thaliana]
Length = 655
Score = 199 bits (505), Expect = 5e-50
Identities = 97/106 (91%), Positives = 101/106 (94%)
Frame = -2
Query: 755 EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 576
E ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSS LRAATSGQAFPQC
Sbjct: 550 EGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQC 609
Query: 575 VFDHWDMMSSDPLEPGSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 438
VFDHW+MMSSDPLEPG+ A+ LVADIR+RKGLKE MTPLSEFEDKL
Sbjct: 610 VFDHWEMMSSDPLEPGTQASVLVADIRKRKGLKEAMTPLSEFEDKL 655
>gb|AAN31925.1| putative elongation factor [Arabidopsis thaliana]
Length = 665
Score = 199 bits (505), Expect = 5e-50
Identities = 97/106 (91%), Positives = 101/106 (94%)
Frame = -2
Query: 755 EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 576
E ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSS LRAATSGQAFPQC
Sbjct: 560 EGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQC 619
Query: 575 VFDHWDMMSSDPLEPGSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 438
VFDHW+MMSSDPLEPG+ A+ LVADIR+RKGLKE MTPLSEFEDKL
Sbjct: 620 VFDHWEMMSSDPLEPGTQASVLVADIRKRKGLKEAMTPLSEFEDKL 665
>sp|O23755|EF2_BETVU Elongation factor 2 (EF-2) gi|7443464|pir||T14579 translation
elongation factor eEF-2 - beet gi|2369714|emb|CAB09900.1|
elongation factor 2 [Beta vulgaris]
Length = 843
Score = 195 bits (495), Expect = 7e-49
Identities = 95/106 (89%), Positives = 100/106 (93%)
Frame = -2
Query: 755 EQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 576
E ALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRA+TSGQAFPQC
Sbjct: 738 ENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRASTSGQAFPQC 797
Query: 575 VFDHWDMMSSDPLEPGSGAAQLVADIRRRKGLKEQMTPLSEFEDKL 438
VFDHW+MM SDPLE GS A+ LV+ IR+RKGLKEQMTPLSEFEDKL
Sbjct: 798 VFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFEDKL 843
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,287,293
Number of Sequences: 1393205
Number of extensions: 13605038
Number of successful extensions: 28384
Number of sequences better than 10.0: 333
Number of HSP's better than 10.0 without gapping: 27602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28336
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
