Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005662A_C01 KMC005662A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177234.1| unknown protein; protein id: At1g70770.1 [Arabi... 64 2e-09
dbj|BAB03379.1| unnamed protein product [Oryza sativa (japonica ... 45 6e-04
gb|EAA22916.1| erythrocyte membrane-associated giant protein ant... 44 0.001
ref|NP_173730.1| unknown protein; protein id: At1g23170.1 [Arabi... 44 0.001
pir||A86366 T26J12.6 protein - Arabidopsis thaliana gi|2829894|g... 44 0.001
>ref|NP_177234.1| unknown protein; protein id: At1g70770.1 [Arabidopsis thaliana]
gi|25406072|pir||C96732 hypothetical protein F15H11.2
[imported] - Arabidopsis thaliana
gi|5902390|gb|AAD55492.1|AC008148_2 Unknown protein
[Arabidopsis thaliana]
gi|12324751|gb|AAG52333.1|AC011663_12 unknown protein;
13405-15968 [Arabidopsis thaliana]
gi|22531184|gb|AAM97096.1| unknown protein [Arabidopsis
thaliana]
Length = 610
Score = 63.5 bits (153), Expect = 2e-09
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 12/119 (10%)
Frame = +1
Query: 214 TNQRTTNEWQTVSYQKRRRNNN--NNSSSSSKQPIADDGDPSDG---VFRSVERHSEDRR 378
+N + W+ V Y KR R + ++++ + +A +G ++G VFRS+E +EDRR
Sbjct: 15 SNGNVDHGWKKVVYPKRHRKQKQADQATANGGKTVASNGTVANGGDNVFRSLEEQAEDRR 74
Query: 379 RRILESQIAAAASDDAAPSRSKRHSD-------DEDGSDDEMDAGAVQNGSAEAKKKVK 534
RRIL +++ A SDD RSK S+ D DGSDDE+ V+ KK K
Sbjct: 75 RRILAAKMTAIDSDDDGVVRSKHRSNGYGDDGYDFDGSDDEIATLKVEEVKKPKPKKEK 133
>dbj|BAB03379.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 586
Score = 45.1 bits (105), Expect = 6e-04
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Frame = +1
Query: 238 WQTVSYQKRRRNNNNNSSSSSKQP---IADDGDPSDGVFRSVERHSEDRRRRILESQIAA 408
WQ V+Y KR R + S+ P +G VF +V+R++E R R +L ++
Sbjct: 27 WQKVTYPKRHRKQGAAALPSAAAPDLGFLPNGGGKVNVFEAVDRNAEKRHRALLAAR--D 84
Query: 409 AASDDA---APSRSKRHSDDEDGSDDEMDAGAVQNGSAEAKKKVK 534
AA DA A + + +SDD+D SD +A A + K KVK
Sbjct: 85 AADPDAARIAAATASAYSDDDDDSD---EAQATRPEGEVKKPKVK 126
>gb|EAA22916.1| erythrocyte membrane-associated giant protein antigen 332 [Plasmodium
yoelii yoelii]
Length = 3404
Score = 44.3 bits (103), Expect = 0.001
Identities = 32/124 (25%), Positives = 55/124 (43%), Gaps = 1/124 (0%)
Frame = +1
Query: 160 EQEEEEEAHRRRTQTTTQTNQRTTNEWQTVSYQKRRRNNNNNSSSSSKQPIADDGDPSDG 339
E+EEEEE R + T NQ N+ S + S++ D + G
Sbjct: 1250 EEEEEEEITRTKVDVNTIKNQ-----------------NDTESENESEEEEIDRNEIDVG 1292
Query: 340 VFRSVERHSEDRRRRILESQIAAAASDDAAPSRSKRHSDDEDGSDDEMDAGAVQNGS-AE 516
++ + I S I AA + + + S+ S++E+ E+D G++QN S AE
Sbjct: 1293 SIQNQSDAESEEEEEIARSDIDAATTKNQNYAESENESEEEEIDKSEIDVGSIQNQSNAE 1352
Query: 517 AKKK 528
++K+
Sbjct: 1353 SEKE 1356
>ref|NP_173730.1| unknown protein; protein id: At1g23170.1 [Arabidopsis thaliana]
Length = 569
Score = 44.3 bits (103), Expect = 0.001
Identities = 38/127 (29%), Positives = 60/127 (46%), Gaps = 15/127 (11%)
Frame = +1
Query: 199 QTTTQTNQRTTNEWQTVSYQKRRRNNNNNSSSSSKQP-----IADDGDPSDG---VFRSV 354
+TT + + W+ V Y KR R +++ + + +G S+G VFRS+
Sbjct: 13 ETTNGNSHNDDHGWKKVVYPKRNRKQKPADQAAATKNGVTGNLIPNGTLSNGGGNVFRSL 72
Query: 355 ERHSEDRRRRILESQIAAAASDDAAPSRSKRHSD-------DEDGSDDEMDAGAVQNGSA 513
E +E R +IL ++ A+ +D + RSK S+ D D SD E+ G +N A
Sbjct: 73 EEQAEGRHLQILAAKKASDTADVSDGGRSKWRSNGYGDEGYDFDDSDSEIAVGK-ENLKA 131
Query: 514 EAKKKVK 534
E KK K
Sbjct: 132 EEVKKPK 138
>pir||A86366 T26J12.6 protein - Arabidopsis thaliana gi|2829894|gb|AAC00602.1|
Unknown protein [Arabidopsis thaliana]
Length = 1299
Score = 44.3 bits (103), Expect = 0.001
Identities = 38/127 (29%), Positives = 60/127 (46%), Gaps = 15/127 (11%)
Frame = +1
Query: 199 QTTTQTNQRTTNEWQTVSYQKRRRNNNNNSSSSSKQP-----IADDGDPSDG---VFRSV 354
+TT + + W+ V Y KR R +++ + + +G S+G VFRS+
Sbjct: 13 ETTNGNSHNDDHGWKKVVYPKRNRKQKPADQAAATKNGVTGNLIPNGTLSNGGGNVFRSL 72
Query: 355 ERHSEDRRRRILESQIAAAASDDAAPSRSKRHSD-------DEDGSDDEMDAGAVQNGSA 513
E +E R +IL ++ A+ +D + RSK S+ D D SD E+ G +N A
Sbjct: 73 EEQAEGRHLQILAAKKASDTADVSDGGRSKWRSNGYGDEGYDFDDSDSEIAVGK-ENLKA 131
Query: 514 EAKKKVK 534
E KK K
Sbjct: 132 EEVKKPK 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.310 0.125 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,451,317
Number of Sequences: 1393205
Number of extensions: 12985865
Number of successful extensions: 92669
Number of sequences better than 10.0: 834
Number of HSP's better than 10.0 without gapping: 59880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83852
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
