Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005660A_C01 KMC005660A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P50302|METL_ACTCH S-adenosylmethionine synthetase 2 (Methioni... 127 9e-29
sp|P50301|METK_ACTCH S-adenosylmethionine synthetase 1 (Methioni... 122 3e-27
sp|Q96553|METM_CATRO S-adenosylmethionine synthetase 3 (Methioni... 122 3e-27
sp|P43282|METM_LYCES S-adenosylmethionine synthetase 3 (Methioni... 122 4e-27
gb|AAF42974.1|AF127243_1 S-adenosyl-L-methionine synthetase [Nic... 122 5e-27
>sp|P50302|METL_ACTCH S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase
2) (AdoMet synthetase 2) gi|726028|gb|AAA81377.1|
S-adenosylmethionine synthetase [Actinidia chinensis]
Length = 390
Score = 127 bits (320), Expect = 9e-29
Identities = 59/65 (90%), Positives = 62/65 (94%)
Frame = -3
Query: 617 GKIPDNEILALIKESFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDADFTWETVKV 438
GKIPD +ILALIKE+FDFRPGMIAINLDL RGGNFRYQKTAAYGHFGRDDAD TWETVK+
Sbjct: 326 GKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKI 385
Query: 437 LKPKA 423
LKPKA
Sbjct: 386 LKPKA 390
>sp|P50301|METK_ACTCH S-adenosylmethionine synthetase 1 (Methionine adenosyltransferase
1) (AdoMet synthetase 1) gi|726030|gb|AAA81378.1|
S-adenosylmethionine synthetase [Actinidia chinensis]
Length = 390
Score = 122 bits (307), Expect = 3e-27
Identities = 57/65 (87%), Positives = 60/65 (91%)
Frame = -3
Query: 617 GKIPDNEILALIKESFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDADFTWETVKV 438
GKI D +ILALIKE+FDFRPGMIAINLDL RGGN RYQKTAAYGHFGRDD DFTWETVK+
Sbjct: 326 GKIADKDILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKI 385
Query: 437 LKPKA 423
LKPKA
Sbjct: 386 LKPKA 390
>sp|Q96553|METM_CATRO S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase
3) (AdoMet synthetase 3) gi|1655580|emb|CAA95858.1|
S-adenosyl-L-methionine synthetase 3 [Catharanthus
roseus]
Length = 390
Score = 122 bits (307), Expect = 3e-27
Identities = 57/65 (87%), Positives = 60/65 (91%)
Frame = -3
Query: 617 GKIPDNEILALIKESFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDADFTWETVKV 438
GKIPD +ILALIKE+FDFRPGMIAINLDL RGGNFRYQKTAA GH GRDD DFTWETVK+
Sbjct: 326 GKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKI 385
Query: 437 LKPKA 423
LKPKA
Sbjct: 386 LKPKA 390
>sp|P43282|METM_LYCES S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase
3) (AdoMet synthetase 3) gi|1084408|pir||S46540
methionine adenosyltransferase (EC 2.5.1.6) - tomato
gi|429108|emb|CAA80867.1| S-adenosyl-L-methionine
synthetase [Lycopersicon esculentum]
Length = 390
Score = 122 bits (306), Expect = 4e-27
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = -3
Query: 617 GKIPDNEILALIKESFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDADFTWETVKV 438
G IPD +IL LIKE+FDFRPGM++INLDL+RGGN+RYQKTAAYGHFGRDD DFTWETVKV
Sbjct: 326 GTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKV 385
Query: 437 LKPKA 423
LKPKA
Sbjct: 386 LKPKA 390
>gb|AAF42974.1|AF127243_1 S-adenosyl-L-methionine synthetase [Nicotiana tabacum]
Length = 390
Score = 122 bits (305), Expect = 5e-27
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = -3
Query: 617 GKIPDNEILALIKESFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDADFTWETVKV 438
G IPD +IL LIKE+FDFRPGM++INLDL+RGGNFRYQKTAAYGHFGRDD DF+WETVKV
Sbjct: 326 GTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKV 385
Query: 437 LKPKA 423
LKPKA
Sbjct: 386 LKPKA 390
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,774,963
Number of Sequences: 1393205
Number of extensions: 9541859
Number of successful extensions: 22221
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 21297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22043
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
