Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005659A_C01 KMC005659A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190798.1| putative protein; protein id: At3g52300.1, supp... 104 7e-22
emb|CAC81059.1| mitochondrial F0 ATP synthase D chain [Arabidops... 104 7e-22
gb|AAO82482.1| conserved hypothetical protein [Enterococcus faec... 37 0.14
ref|NP_608682.1| CG18641-PA [Drosophila melanogaster] gi|7295956... 34 1.6
gb|EAA12747.1| agCP11231 [Anopheles gambiae str. PEST] 33 2.1
>ref|NP_190798.1| putative protein; protein id: At3g52300.1, supported by cDNA:
27681., supported by cDNA: gi_15215603, supported by
cDNA: gi_20334871 [Arabidopsis thaliana]
gi|25089786|sp|Q9FT52|ATPQ_ARATH ATP synthase D chain,
mitochondrial gi|11358239|pir||T46100 hypothetical
protein T25B15.70 - Arabidopsis thaliana
gi|10045563|emb|CAC07921.1| putative protein
[Arabidopsis thaliana] gi|15215604|gb|AAK91347.1|
AT3g52300/T25B15_70 [Arabidopsis thaliana]
gi|20334872|gb|AAM16192.1| AT3g52300/T25B15_70
[Arabidopsis thaliana] gi|21555349|gb|AAM63838.1|
mitochondrial F0 ATP synthase D chain [Arabidopsis
thaliana]
Length = 168
Score = 104 bits (260), Expect = 7e-22
Identities = 49/54 (90%), Positives = 51/54 (93%)
Frame = -3
Query: 588 EKSWKESERLEKEIADVQELKKKLSTMTADEYFAKHPELKKKFDDEIRNDNWGY 427
+KS KESERLEKEIADVQE+ KKLSTMTADEYF KHPELKKKFDDEIRNDNWGY
Sbjct: 115 QKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
>emb|CAC81059.1| mitochondrial F0 ATP synthase D chain [Arabidopsis thaliana]
Length = 145
Score = 104 bits (260), Expect = 7e-22
Identities = 49/54 (90%), Positives = 51/54 (93%)
Frame = -3
Query: 588 EKSWKESERLEKEIADVQELKKKLSTMTADEYFAKHPELKKKFDDEIRNDNWGY 427
+KS KESERLEKEIADVQE+ KKLSTMTADEYF KHPELKKKFDDEIRNDNWGY
Sbjct: 92 QKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 145
>gb|AAO82482.1| conserved hypothetical protein [Enterococcus faecalis V583]
Length = 116
Score = 37.4 bits (85), Expect = 0.14
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = -3
Query: 576 KESERLE---KEIADVQELKKKLSTMTADEYFAKHPELKKKFDDEIRNDNWGY*FSKLQT 406
KESE+L+ KE+A EL+K + K+PE K+K+ +E++++ F +LQT
Sbjct: 31 KESEKLDEWLKEVAPSTELRKWFNHEAN-----KYPEFKQKYQEELKHEPTATAFKQLQT 85
Query: 405 VAKH 394
+ K+
Sbjct: 86 IVKN 89
>ref|NP_608682.1| CG18641-PA [Drosophila melanogaster] gi|7295956|gb|AAF51254.1|
CG18641-PA [Drosophila melanogaster]
Length = 348
Score = 33.9 bits (76), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +3
Query: 30 KHLYNHPRGIIPDEKQFQGFPIGTKYTQLIQN 125
K+L HPRG+ PD+ F G+ +G L+ N
Sbjct: 148 KYLARHPRGVQPDDLHFIGYSVGAHIAGLVAN 179
>gb|EAA12747.1| agCP11231 [Anopheles gambiae str. PEST]
Length = 348
Score = 33.5 bits (75), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +3
Query: 30 KHLYNHPRGIIPDEKQFQGFPIGTKYTQLIQN 125
K++ NHPRG+ PD+ G+ +G L+ N
Sbjct: 145 KYIANHPRGVPPDDMHLIGYSVGAHIAGLVAN 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,531,963
Number of Sequences: 1393205
Number of extensions: 9060072
Number of successful extensions: 22898
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22881
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
