Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005657A_C01 KMC005657A_c01
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_777079.1| solute carrier family 21 (organic anion transpo... 33 3.1
ref|NP_066580.1| organic anion transporting polypeptide A isofor... 33 3.1
>ref|NP_777079.1| solute carrier family 21 (organic anion transporter), member 3 [Bos
taurus] gi|16209594|gb|AAL14261.1| liver-specific
organic anion transporter [Bos taurus]
gi|23320953|emb|CAD48487.1| organic anion transporter A
[Bos taurus]
Length = 666
Score = 33.1 bits (74), Expect = 3.1
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 607 GFLPAGFGGKCRIYFPSKFSYLAVGVMIGYQASALVPS-VSMFIKRE 470
G L G G CRIY + F Y+ +G+ + S+ +P+ + +FI R+
Sbjct: 576 GTLKCGESGACRIYDSNSFRYIYLGIPAALRGSSYIPAFLILFILRK 622
>ref|NP_066580.1| organic anion transporting polypeptide A isoform a;
sodium-independent organic anion transporter [Homo
sapiens] gi|19913403|ref|NP_602307.1| organic anion
transporting polypeptide A isoform a; sodium-independent
organic anion transporter [Homo sapiens]
gi|1171882|sp|P46721|S213_HUMAN Solute carrier family 21
member 3 (Sodium-independent organic anion transporter)
(Organic anion transporting polypeptide 1) (OATP1)
(OATP-A) gi|885978|gb|AAA87732.1| organic anion
transporting polypeptide gi|9188296|emb|CAB97006.1|
organic anion transporting polypeptide 1 (OATP1) [Homo
sapiens] gi|11095827|gb|AAG30037.1|AF279784_1 organic
anion transporting polypeptide [Homo sapiens]
Length = 670
Score = 33.1 bits (74), Expect = 3.1
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -1
Query: 607 GFLPAGFGGKCRIYFPSKFSYLAVGVMIGYQASALVPSVSMFI 479
G L G G CRIY + F Y+ +G+ + S+ VP++ + I
Sbjct: 579 GTLKCGESGACRIYDSTTFRYIYLGLPAALRGSSFVPALIILI 621
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,913,195
Number of Sequences: 1393205
Number of extensions: 10924353
Number of successful extensions: 23703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23702
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
