Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005652A_C01 KMC005652A_c01
(752 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565853.1| Expressed protein; protein id: At2g36885.1, sup... 150 1e-35
ref|ZP_00070968.1| hypothetical protein [Trichodesmium erythraeu... 75 1e-12
ref|NP_486024.1| unknown protein [Nostoc sp. PCC 7120] gi|255298... 66 6e-10
ref|NP_682283.1| ORF_ID:tll1493~hypothetical protein [Thermosyne... 37 0.23
ref|ZP_00074245.1| hypothetical protein [Trichodesmium erythraeu... 35 1.2
>ref|NP_565853.1| Expressed protein; protein id: At2g36885.1, supported by cDNA:
29157., supported by cDNA: gi_17979286 [Arabidopsis
thaliana] gi|20197943|gb|AAM15322.1| Expressed protein
[Arabidopsis thaliana] gi|21555809|gb|AAM63938.1|
unknown [Arabidopsis thaliana]
gi|26983860|gb|AAN86182.1| unknown protein [Arabidopsis
thaliana]
Length = 256
Score = 150 bits (380), Expect = 1e-35
Identities = 76/89 (85%), Positives = 80/89 (89%)
Frame = -1
Query: 752 PKLLAGMFFFFALGATGGVTSLLTSDKPIFESPHAVTGAIGLALLTVQTILPTLFEGNPG 573
PKLLAGMFFFFALGATGGV SLLTSDKPIFESPHAVTG IGL LLTVQTILP+LF+ P
Sbjct: 167 PKLLAGMFFFFALGATGGVISLLTSDKPIFESPHAVTGLIGLGLLTVQTILPSLFKEKPE 226
Query: 572 LRSVHGILGSSIMTLFLIHAALGLQLGLS 486
LR+VHGILGS IM LFL+HAA GLQLGLS
Sbjct: 227 LRNVHGILGSGIMALFLVHAAFGLQLGLS 255
>ref|ZP_00070968.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 158
Score = 74.7 bits (182), Expect = 1e-12
Identities = 43/90 (47%), Positives = 55/90 (60%), Gaps = 2/90 (2%)
Frame = -1
Query: 749 KLLAGMFFFFALGATGGVTSLLTSDKPIFESPHAVTGAIGLALLTVQTILP-TLFEGNP- 576
K+ MF F ALG TGGV SL+ ++ IFESPH TG+I L LL + T F GN
Sbjct: 68 KMAPLMFLFMALGYTGGVLSLVMQEQQIFESPHFWTGSIVLTLLAANGFISLTKFGGNQI 127
Query: 575 GLRSVHGILGSSIMTLFLIHAALGLQLGLS 486
LR+ H LGS + + +HA LGL+LGL+
Sbjct: 128 ALRTTHAYLGSIALCIMFVHAILGLRLGLA 157
>ref|NP_486024.1| unknown protein [Nostoc sp. PCC 7120] gi|25529887|pir||AB2054
hypothetical protein all1984 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131074|dbj|BAB73683.1|
ORF_ID:all1984~unknown protein [Nostoc sp. PCC 7120]
Length = 161
Score = 65.9 bits (159), Expect = 6e-10
Identities = 38/85 (44%), Positives = 51/85 (59%), Gaps = 2/85 (2%)
Frame = -1
Query: 734 MFFFFALGATGGVTSLLTSDKPIFESPHAVTGAIGLALLTVQ-TILPTLFEGNPG-LRSV 561
+F F A G TGGV SL+ KP+FESPH TG++ L LL + I + F G+ LR+
Sbjct: 76 LFLFLAGGYTGGVLSLVMQHKPLFESPHFWTGSLVLVLLLINGGISLSGFGGDKKILRAA 135
Query: 560 HGILGSSIMTLFLIHAALGLQLGLS 486
H LGS + + +HA LG LG+S
Sbjct: 136 HAYLGSVAIAILFVHAVLGFNLGIS 160
>ref|NP_682283.1| ORF_ID:tll1493~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22295218|dbj|BAC09045.1|
ORF_ID:tll1493~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 155
Score = 37.4 bits (85), Expect = 0.23
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 716 LGATGGVTSLLTSDKPIFESPHAVTGAIGLALLTVQ-TILPTLFEGNPGLRSVHGILGSS 540
+G GG+ ++ +F PH + G AL+ + ++ P + +G+ R++H L
Sbjct: 73 MGTIGGMAVTYINNGKLFVGPHLIVGLAMTALVAISASLTPFMQKGSEAARALHMTLNLF 132
Query: 539 IMTLFLIHAALGLQL 495
++ LF A GLQ+
Sbjct: 133 LVILFGWQAVTGLQI 147
>ref|ZP_00074245.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 155
Score = 35.0 bits (79), Expect = 1.2
Identities = 22/79 (27%), Positives = 40/79 (49%), Gaps = 2/79 (2%)
Frame = -1
Query: 725 FFALGATGGVTSLLTSDKPIFESPHAVTGAIGL--ALLTVQTILPTLFEGNPGLRSVHGI 552
F LG+ GG+T ++ +F PH + G +G+ A+ ++ P + +G R H
Sbjct: 70 FMVLGSLGGMTVTYINNGKLFFGPHLLAG-LGMMGAIAMSASLTPFMQKGQNWARYSHIA 128
Query: 551 LGSSIMTLFLIHAALGLQL 495
L S++ LF A G+++
Sbjct: 129 LNVSLLGLFSWQAVTGVEI 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,505,502
Number of Sequences: 1393205
Number of extensions: 12779817
Number of successful extensions: 25372
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25363
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
