Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005645A_C01 KMC005645A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC85725.1| putative carbamoyl phosphate synthase small subu... 239 1e-62
gb|AAL87160.1|AF480496_14 putative carbamoyl phosphate synthetas... 232 2e-60
gb|AAC25961.1| carbamoyl phosphate synthetase small subunit [Ara... 221 3e-57
ref|NP_566824.1| carbamoyl phosphate synthetase small subunit; p... 221 3e-57
ref|NP_232020.1| carbamoyl-phosphate synthase, small subunit [Vi... 145 4e-34
>emb|CAC85725.1| putative carbamoyl phosphate synthase small subunit [Nicotiana
tabacum]
Length = 432
Score = 239 bits (610), Expect = 1e-62
Identities = 123/174 (70%), Positives = 140/174 (79%), Gaps = 10/174 (5%)
Frame = +1
Query: 40 VTLSDLTNHRFGSKSPYPPAKASVFTLRCSA----------GNGDRPWKNSDARLVLEDG 189
++ + +T+ F +K A VFT+ CS+ G +RPWK +DARLVLEDG
Sbjct: 11 LSTTTITSALFSNKKS---ANFRVFTVGCSSKILSSDGAPSGLVERPWKVADARLVLEDG 67
Query: 190 SIWKAKSFGAIGTQVGEVVFNTSLTGYQEIVTDPSYAGQFVLMTNPHIGNTGINFDDEES 369
SIWKAKSFGA GTQVGEVVFNTSLTGYQEI+TDPSYAGQFVLMTNPHIGNTG+NF DEES
Sbjct: 68 SIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFGDEES 127
Query: 370 RQCFLSGLVIRSLSISTSNWRCVKDLGDYLIERNIMGIYDVDTRAITRRLREDG 531
QCFL+GLVIRSLSISTSNWRC + L +YL +RNIMGIYDVDTRAITRRLR+DG
Sbjct: 128 MQCFLAGLVIRSLSISTSNWRCKETLDEYLAKRNIMGIYDVDTRAITRRLRQDG 181
>gb|AAL87160.1|AF480496_14 putative carbamoyl phosphate synthetase small subunit [Oryza sativa
(japonica cultivar-group)]
Length = 462
Score = 232 bits (591), Expect = 2e-60
Identities = 110/129 (85%), Positives = 121/129 (93%)
Frame = +1
Query: 145 RPWKNSDARLVLEDGSIWKAKSFGAIGTQVGEVVFNTSLTGYQEIVTDPSYAGQFVLMTN 324
RPWK SDARLVLEDGS+WKAKSFGA GTQVGEVVFNTSLTGYQEI+TDPSYAGQFVLMTN
Sbjct: 70 RPWKLSDARLVLEDGSVWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTN 129
Query: 325 PHIGNTGINFDDEESRQCFLSGLVIRSLSISTSNWRCVKDLGDYLIERNIMGIYDVDTRA 504
PHIGNTG+N DDEES +CFL+GL+IR+LSI TSNWRC + L +YL++RNIMGIYDVDTRA
Sbjct: 130 PHIGNTGVNPDDEESNRCFLAGLIIRNLSICTSNWRCTETLEEYLMKRNIMGIYDVDTRA 189
Query: 505 ITRRLREDG 531
ITRRLREDG
Sbjct: 190 ITRRLREDG 198
>gb|AAC25961.1| carbamoyl phosphate synthetase small subunit [Arabidopsis thaliana]
Length = 428
Score = 221 bits (564), Expect = 3e-57
Identities = 109/149 (73%), Positives = 125/149 (83%), Gaps = 8/149 (5%)
Frame = +1
Query: 109 VFTLRCS--------AGNGDRPWKNSDARLVLEDGSIWKAKSFGAIGTQVGEVVFNTSLT 264
V +RCS +G ++PW + +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLT
Sbjct: 29 VSVIRCSTSPLTFPTSGVVEKPWTSYNARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLT 88
Query: 265 GYQEIVTDPSYAGQFVLMTNPHIGNTGINFDDEESRQCFLSGLVIRSLSISTSNWRCVKD 444
GYQEI+TDPSYAGQFVLMTNP IGNTG+N DDEES QCFL+GLVIR+LSISTSNWRC K
Sbjct: 89 GYQEILTDPSYAGQFVLMTNPQIGNTGVNPDDEESGQCFLTGLVIRNLSISTSNWRCTKT 148
Query: 445 LGDYLIERNIMGIYDVDTRAITRRLREDG 531
L DYL ER+IMG+YD+DTRAITRRLREDG
Sbjct: 149 LADYLTERDIMGVYDLDTRAITRRLREDG 177
>ref|NP_566824.1| carbamoyl phosphate synthetase small subunit; protein id:
At3g27740.1, supported by cDNA: gi_19310630 [Arabidopsis
thaliana] gi|9294479|dbj|BAB02698.1| carbamoyl-phosphate
synthetase small subunit [Arabidopsis thaliana]
gi|15028109|gb|AAK76678.1| putative carbamoyl phosphate
synthetase small subunit [Arabidopsis thaliana]
gi|19310631|gb|AAL85046.1| putative carbamoyl phosphate
synthetase small subunit [Arabidopsis thaliana]
Length = 430
Score = 221 bits (564), Expect = 3e-57
Identities = 109/149 (73%), Positives = 125/149 (83%), Gaps = 8/149 (5%)
Frame = +1
Query: 109 VFTLRCS--------AGNGDRPWKNSDARLVLEDGSIWKAKSFGAIGTQVGEVVFNTSLT 264
V +RCS +G ++PW + +ARLVLEDGSIW AKSFGA GT++ E+VFNTSLT
Sbjct: 31 VSVIRCSTSPLTFPTSGVVEKPWTSYNARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLT 90
Query: 265 GYQEIVTDPSYAGQFVLMTNPHIGNTGINFDDEESRQCFLSGLVIRSLSISTSNWRCVKD 444
GYQEI+TDPSYAGQFVLMTNP IGNTG+N DDEES QCFL+GLVIR+LSISTSNWRC K
Sbjct: 91 GYQEILTDPSYAGQFVLMTNPQIGNTGVNPDDEESGQCFLTGLVIRNLSISTSNWRCTKT 150
Query: 445 LGDYLIERNIMGIYDVDTRAITRRLREDG 531
L DYL ER+IMG+YD+DTRAITRRLREDG
Sbjct: 151 LADYLTERDIMGVYDLDTRAITRRLREDG 179
>ref|NP_232020.1| carbamoyl-phosphate synthase, small subunit [Vibrio cholerae]
gi|21759057|sp|Q9KPH8|CARA_VIBCH Carbamoyl-phosphate
synthase small chain (Carbamoyl-phosphate synthetase
glutamine chain) gi|11268580|pir||E82083
carbamoyl-phosphate synthase, small chain VC2390
[imported] - Vibrio cholerae (strain N16961 serogroup
O1) gi|9656962|gb|AAF95533.1| carbamoyl-phosphate
synthase, small subunit [Vibrio cholerae]
Length = 379
Score = 145 bits (365), Expect = 4e-34
Identities = 73/125 (58%), Positives = 90/125 (71%)
Frame = +1
Query: 157 NSDARLVLEDGSIWKAKSFGAIGTQVGEVVFNTSLTGYQEIVTDPSYAGQFVLMTNPHIG 336
+ A LVLEDG++++ S GA G VGEVVFNTS+TGYQEI+TDPSY+ Q V +T PHIG
Sbjct: 2 SKSALLVLEDGTVFRGVSIGADGISVGEVVFNTSMTGYQEILTDPSYSQQIVTLTYPHIG 61
Query: 337 NTGINFDDEESRQCFLSGLVIRSLSISTSNWRCVKDLGDYLIERNIMGIYDVDTRAITRR 516
NTG N +DEES GLVIR L + SN+R + L DYL +NI+GI D+DTR +TR
Sbjct: 62 NTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRI 121
Query: 517 LREDG 531
LRE G
Sbjct: 122 LREKG 126
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.317 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,280,558
Number of Sequences: 1393205
Number of extensions: 9813523
Number of successful extensions: 29609
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 28863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29520
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
