Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005642A_C01 KMC005642A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77722.1| DNA polymerase V [Saccharomyces cerevisiae] 37 0.21
ref|NP_010859.1| DNA polymerase V that has motifs typical of DNA... 37 0.21
gb|AAC14067.1| TcC31.3 [Trypanosoma cruzi] 36 0.28
gb|AAM08909.1|AC113259_9 TC3_47I12.9 [Trypanosoma cruzi] 35 0.47
dbj|BAB85672.1| cytochrome P450 3A46v1 [Sus scrofa] 35 0.61
>dbj|BAA77722.1| DNA polymerase V [Saccharomyces cerevisiae]
Length = 1022
Score = 36.6 bits (83), Expect = 0.21
Identities = 37/141 (26%), Positives = 65/141 (45%), Gaps = 6/141 (4%)
Frame = +2
Query: 113 IQVLPLICHLSPT**KKKLNSMADATQLVALAPLARFQEILKKISQMVEKSRESGIAQRI 292
I V+ +C S K + NSM T+++ L+ LA+ + +L+K+S + I Q+
Sbjct: 627 ISVIEELCEFS----KHENNSMVGITEIL-LSLLAQKKALLRKLSLI--------IWQQF 673
Query: 293 LRSTLIEFNHVVLEIKRYNEH------LAQPREEIKTLIREKDAGEEGEEGDKCVNSCLQ 454
+ +E ++L+I + E+ L + EE + + E DA E+ +
Sbjct: 674 IEEVGLEELQILLDILKARENKQGFAQLFEGEEEFEEIKEENDASEDESK---------- 723
Query: 455 VVTDRVGHGKDDSDSVDADEK 517
T + +SDS DADEK
Sbjct: 724 --TGSESESESESDSDDADEK 742
>ref|NP_010859.1| DNA polymerase V that has motifs typical of DNA polymerase family.
Aphidicolin-sensitive; stimulated by yeast proliferating
cell nuclear antigen (PCNA).; Pol5p [Saccharomyces
cerevisiae] gi|731417|sp|P39985|DPO5_YEAST DNA
polymerase V (POL V) gi|1077610|pir||S50534 hypothetical
protein YEL055c - yeast (Saccharomyces cerevisiae)
gi|603263|gb|AAB65032.1| Yel055cp [Saccharomyces
cerevisiae]
Length = 1022
Score = 36.6 bits (83), Expect = 0.21
Identities = 37/141 (26%), Positives = 65/141 (45%), Gaps = 6/141 (4%)
Frame = +2
Query: 113 IQVLPLICHLSPT**KKKLNSMADATQLVALAPLARFQEILKKISQMVEKSRESGIAQRI 292
I V+ +C S K + NSM T+++ L+ LA+ + +L+K+S + I Q+
Sbjct: 627 ISVIEELCEFS----KHENNSMVGITEIL-LSLLAQKKALLRKLSLI--------IWQQF 673
Query: 293 LRSTLIEFNHVVLEIKRYNEH------LAQPREEIKTLIREKDAGEEGEEGDKCVNSCLQ 454
+ +E ++L+I + E+ L + EE + + E DA E+ +
Sbjct: 674 IEEVGLEELQILLDILKARENKQGFAQLFEGEEEFEEIKEENDASEDESK---------- 723
Query: 455 VVTDRVGHGKDDSDSVDADEK 517
T + +SDS DADEK
Sbjct: 724 --TGSESESESESDSDDADEK 742
>gb|AAC14067.1| TcC31.3 [Trypanosoma cruzi]
Length = 350
Score = 36.2 bits (82), Expect = 0.28
Identities = 28/95 (29%), Positives = 42/95 (43%)
Frame = +2
Query: 221 FQEILKKISQMVEKSRESGIAQRILRSTLIEFNHVVLEIKRYNEHLAQPREEIKTLIREK 400
FQ+ L+K+ Q + + AQ R E E +R+ EH+ EE+ L REK
Sbjct: 183 FQDELEKMQQQNKADAAAAAAQHPTRGETYESTLAQSERRRWKEHVRHTVEELALLHREK 242
Query: 401 DAGEEGEEGDKCVNSCLQVVTDRVGHGKDDSDSVD 505
+ G +N+ L T+R H D+D D
Sbjct: 243 EKQAAGAAMASIMNTAL--ATNR--HHSRDADDDD 273
>gb|AAM08909.1|AC113259_9 TC3_47I12.9 [Trypanosoma cruzi]
Length = 475
Score = 35.4 bits (80), Expect = 0.47
Identities = 26/107 (24%), Positives = 43/107 (39%)
Frame = +2
Query: 221 FQEILKKISQMVEKSRESGIAQRILRSTLIEFNHVVLEIKRYNEHLAQPREEIKTLIREK 400
FQ+ L+K+ Q + + Q R E E +R+ EH+ EE+ L REK
Sbjct: 183 FQDELEKMQQQNKADAAAAAVQHPTRGETYESTLAQSERRRWKEHVRHTVEELALLHREK 242
Query: 401 DAGEEGEEGDKCVNSCLQVVTDRVGHGKDDSDSVDADEKQALTAKDV 541
+ G +++ L DD D A ++ A ++V
Sbjct: 243 EKQAAGAAMASIMDTALATNRHHSRDADDDDDGGSAGKRIADLQREV 289
>dbj|BAB85672.1| cytochrome P450 3A46v1 [Sus scrofa]
Length = 230
Score = 35.0 bits (79), Expect = 0.61
Identities = 36/113 (31%), Positives = 53/113 (46%)
Frame = -2
Query: 541 DIFRCESLLLISINRIRIILTMPNSVSDNLKTGIDTLVPFFSFFPCIFFSDEGFDFFSRL 362
DIF S+ +I+ + + N+ D L+ F SFF F S F F + +
Sbjct: 76 DIFGAYSMDVITSTAFGVNVDSLNNPQDPFVENSRKLLKF-SFFSPFFLSIIFFPFLTPI 134
Query: 361 SQVLVVTLDFQHHMVKFYER*P*NSLSDSTLSRFLHHLRDLLQDLLKSSQRSK 203
+VL +TL F +V F+ R + +S L H DLLQ L+ +SQ SK
Sbjct: 135 LEVLNITL-FPKSVVNFFTR-SIKRMKESRLKDTQKHRVDLLQ-LMINSQNSK 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,720,182
Number of Sequences: 1393205
Number of extensions: 9408449
Number of successful extensions: 34779
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 31948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34629
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
