Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005639A_C01 KMC005639A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF85975.1|AF275639_1 cytosolic phosphoglycerate kinase [Pisu... 324 8e-88
gb|AAO63774.1| 3-phosphoglycerate kinase [Populus tremuloides] 307 1e-82
sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic gi|74345... 305 3e-82
dbj|BAA33801.1| cytosolic phosphoglycerate kinase 1 [Populus nigra] 305 5e-82
gb|AAM61185.1| phosphoglycerate kinase, putative [Arabidopsis th... 301 4e-81
>gb|AAF85975.1|AF275639_1 cytosolic phosphoglycerate kinase [Pisum sativum]
Length = 401
Score = 324 bits (830), Expect = 8e-88
Identities = 163/172 (94%), Positives = 170/172 (98%)
Frame = +2
Query: 179 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGFGAKVI 358
MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTR+RAA+PTIKYLTG+GAKVI
Sbjct: 1 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRIRAAIPTIKYLTGYGAKVI 60
Query: 359 LSSHLGRPKGVTPKYSLKPLVPRLSELLGTEVKIASDSIGEEVEKLVAQIPEGGVILLEN 538
LSSHLGRPKGVTPKYSLKPLVPRLSELLG+EV IA DSIGEEVEKLVAQIPEGGV+LLEN
Sbjct: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGSEVTIAGDSIGEEVEKLVAQIPEGGVLLLEN 120
Query: 539 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 694
VRF+KEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKP+VA
Sbjct: 121 VRFHKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVA 172
>gb|AAO63774.1| 3-phosphoglycerate kinase [Populus tremuloides]
Length = 401
Score = 307 bits (786), Expect = 1e-82
Identities = 153/172 (88%), Positives = 165/172 (94%)
Frame = +2
Query: 179 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGFGAKVI 358
MATK+SV +LKEADLKGKRVFVRVDLNVPLDDN NITDDTR+RAAVPTIKYL G GA+VI
Sbjct: 1 MATKKSVSSLKEADLKGKRVFVRVDLNVPLDDNFNITDDTRIRAAVPTIKYLMGHGARVI 60
Query: 359 LSSHLGRPKGVTPKYSLKPLVPRLSELLGTEVKIASDSIGEEVEKLVAQIPEGGVILLEN 538
LSSHLGRPKGVTPKYSLKPLVPRLSELLG +VK+A+D IG EVEK+VA+IPEGGV+LLEN
Sbjct: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVDVKMANDCIGVEVEKIVAEIPEGGVLLLEN 120
Query: 539 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 694
VRFYKEEEKNDPEFAKKLASLA++YVNDAFGTAHRAHASTEGVAKYLKPAVA
Sbjct: 121 VRFYKEEEKNDPEFAKKLASLAEIYVNDAFGTAHRAHASTEGVAKYLKPAVA 172
>sp|Q42962|PGKY_TOBAC Phosphoglycerate kinase, cytosolic gi|7434547|pir||T03661
phosphoglycerate kinase (EC 2.7.2.3), cytosolic - common
tobacco gi|1161602|emb|CAA88840.1| phosphoglycerate
kinase (PGK) [Nicotiana tabacum]
Length = 401
Score = 305 bits (782), Expect = 3e-82
Identities = 154/172 (89%), Positives = 164/172 (94%)
Frame = +2
Query: 179 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGFGAKVI 358
MA K+SVG+LKEADLKGKRVFVRVDLNVPLD+N NITDDTR+RAAVPTIKYL G+ VI
Sbjct: 1 MAVKKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVI 60
Query: 359 LSSHLGRPKGVTPKYSLKPLVPRLSELLGTEVKIASDSIGEEVEKLVAQIPEGGVILLEN 538
L+SHLGRPKGVTPKYSLKPLVPRLSELLG EVKIA+DSIG EVEKLVA+IPEGGV+LLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLEN 120
Query: 539 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 694
VRFYKEEEKN+PEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA
Sbjct: 121 VRFYKEEEKNEPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 172
>dbj|BAA33801.1| cytosolic phosphoglycerate kinase 1 [Populus nigra]
Length = 401
Score = 305 bits (780), Expect = 5e-82
Identities = 152/172 (88%), Positives = 164/172 (94%)
Frame = +2
Query: 179 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGFGAKVI 358
MATK+SV +LKEADLKGK VFVRVDLNVPLDDN NITDDTR+RAAVPTIKYL G GA+VI
Sbjct: 1 MATKKSVSSLKEADLKGKSVFVRVDLNVPLDDNFNITDDTRIRAAVPTIKYLMGHGARVI 60
Query: 359 LSSHLGRPKGVTPKYSLKPLVPRLSELLGTEVKIASDSIGEEVEKLVAQIPEGGVILLEN 538
LSSHLGRPKGVTPKYSLKPLVPRLSELLG +VK+A+D IG EVEK+VA+IPEGGV+LLEN
Sbjct: 61 LSSHLGRPKGVTPKYSLKPLVPRLSELLGVDVKMANDCIGVEVEKIVAEIPEGGVLLLEN 120
Query: 539 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 694
VRFYKEEEKNDPEFAKKLASLA++YVNDAFGTAHRAHASTEGVAKYLKPAVA
Sbjct: 121 VRFYKEEEKNDPEFAKKLASLAEIYVNDAFGTAHRAHASTEGVAKYLKPAVA 172
>gb|AAM61185.1| phosphoglycerate kinase, putative [Arabidopsis thaliana]
Length = 401
Score = 301 bits (772), Expect = 4e-81
Identities = 151/172 (87%), Positives = 163/172 (93%)
Frame = +2
Query: 179 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGFGAKVI 358
MATKRSVGTLKEADLKGK VFVRVDLNVPLDDN NITDDTR+RAAVPTIKYL G G++V+
Sbjct: 1 MATKRSVGTLKEADLKGKSVFVRVDLNVPLDDNSNITDDTRIRAAVPTIKYLMGNGSRVV 60
Query: 359 LSSHLGRPKGVTPKYSLKPLVPRLSELLGTEVKIASDSIGEEVEKLVAQIPEGGVILLEN 538
L SHLGRPKGVTPKYSLKPLVPRLSELLG EV +A+DSIGEEV+KLVA +PEGGV+LLEN
Sbjct: 61 LCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDSIGEEVQKLVAGLPEGGVLLLEN 120
Query: 539 VRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPAVA 694
VRFY EEEKNDPEFAKKLA+LAD+YVNDAFGTAHRAHASTEGVAKYLKP+VA
Sbjct: 121 VRFYAEEEKNDPEFAKKLAALADVYVNDAFGTAHRAHASTEGVAKYLKPSVA 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,287,231
Number of Sequences: 1393205
Number of extensions: 12149459
Number of successful extensions: 41931
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 39285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41106
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
