Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005637A_C01 KMC005637A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564326.1| ER lumen protein retaining receptor; protein id... 104 6e-22
gb|AAM64352.1| ER lumen retaining receptor (HDEL receptor), puta... 96 4e-19
ref|NP_566758.1| ER lumen retaining receptor (HDEL receptor), pu... 96 4e-19
dbj|BAB01889.1| ER lumen protein-retaining receptor-like protein... 96 4e-19
sp|Q9ZTN2|ERD2_PETHY ER lumen protein retaining receptor (HDEL r... 94 1e-18
>ref|NP_564326.1| ER lumen protein retaining receptor; protein id: At1g29330.1,
supported by cDNA: gi_20260681 [Arabidopsis thaliana]
gi|544250|sp|P35402|ERD2_ARATH ER lumen protein
retaining receptor (HDEL receptor) gi|541860|pir||A49677
endoplasmic reticulum retention receptor Erd2 -
Arabidopsis thaliana gi|9502409|gb|AAF88108.1|AC021043_1
endoplasmic reticulum retention receptor Erd2
[Arabidopsis thaliana]
gi|12323512|gb|AAG51724.1|AC068667_3 ER lumen protein
retaining receptor; 3333-1007 [Arabidopsis thaliana]
gi|20260682|gb|AAM13239.1| ER lumen protein retaining
receptor; 3333-1007 [Arabidopsis thaliana]
Length = 215
Score = 104 bits (260), Expect = 6e-22
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -1
Query: 555 YRACYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA 388
YR YI+NWIYRY TE FTRWIACVSG+ QTALYADFFYYY+ISWK N+KLKLPA
Sbjct: 160 YRGLYIINWIYRYFTEDHFTRWIACVSGLVQTALYADFFYYYYISWKTNTKLKLPA 215
>gb|AAM64352.1| ER lumen retaining receptor (HDEL receptor), putative [Arabidopsis
thaliana]
Length = 215
Score = 95.5 bits (236), Expect = 4e-19
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -1
Query: 555 YRACYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA 388
YR YILNWIYRY TEP F WI ++G QT LYADFFYYYF+SWKNN KL+LPA
Sbjct: 160 YRGLYILNWIYRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 215
>ref|NP_566758.1| ER lumen retaining receptor (HDEL receptor), putative; protein id:
At3g25040.1, supported by cDNA: 23341., supported by
cDNA: gi_17380929 [Arabidopsis thaliana]
gi|17380930|gb|AAL36277.1| putative ER lumen-retaining
receptor (HDEL receptor) protein [Arabidopsis thaliana]
gi|18369697|emb|CAC81064.1| endoplasmic reticulum
retrieval receptor 2 [Arabidopsis thaliana]
gi|23296793|gb|AAN13171.1| putative ER lumen-retaining
receptor (HDEL receptor) protein [Arabidopsis thaliana]
Length = 215
Score = 95.5 bits (236), Expect = 4e-19
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -1
Query: 555 YRACYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA 388
YR YILNWIYRY TEP F WI ++G QT LYADFFYYYF+SWKNN KL+LPA
Sbjct: 160 YRGLYILNWIYRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 215
>dbj|BAB01889.1| ER lumen protein-retaining receptor-like protein [Arabidopsis
thaliana]
Length = 217
Score = 95.5 bits (236), Expect = 4e-19
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -1
Query: 555 YRACYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA 388
YR YILNWIYRY TEP F WI ++G QT LYADFFYYYF+SWKNN KL+LPA
Sbjct: 162 YRGLYILNWIYRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLPA 217
>sp|Q9ZTN2|ERD2_PETHY ER lumen protein retaining receptor (HDEL receptor) (PGP169-12)
gi|4105782|gb|AAD02548.1| PGPS/D6 [Petunia x hybrida]
Length = 215
Score = 94.0 bits (232), Expect = 1e-18
Identities = 39/56 (69%), Positives = 46/56 (81%)
Frame = -1
Query: 555 YRACYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA 388
YR+ YILNW+YRY TEP F WI ++G+ QT LYADFFYYYF SWKNN+KL+LPA
Sbjct: 160 YRSFYILNWVYRYFTEPHFVHWITWIAGLIQTLLYADFFYYYFQSWKNNTKLELPA 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,331,806
Number of Sequences: 1393205
Number of extensions: 9408120
Number of successful extensions: 24848
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 23917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24672
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
