Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005635A_C01 KMC005635A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_437011.1| putative carbohydrate kinase protein [Sinorhizo... 33 2.8
gb|AAF71142.1|AF128526_1 sporozoite antigen SLAg1 [Theileria les... 33 2.8
ref|NP_781931.1| DNA mismatch repair protein mutS [Clostridium t... 32 6.3
>ref|NP_437011.1| putative carbohydrate kinase protein [Sinorhizobium meliloti]
gi|25503799|pir||G95900 probable carbohydrate kinase
protein [imported] - Sinorhizobium meliloti (strain
1021) magaplasmid pSymB gi|15140344|emb|CAC48871.1|
putative carbohydrate kinase protein [Sinorhizobium
meliloti]
Length = 490
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +2
Query: 134 RLELLRVMVAKKK*ELFLGHHKLLVDSTLIHFRYHLHGLRQFKIIS 271
R EL+R + + G H DS+L H+RYH GLR F +IS
Sbjct: 222 RPELVRRFGLPAEMRVLTGGH----DSSLNHYRYHAAGLRDFTVIS 263
>gb|AAF71142.1|AF128526_1 sporozoite antigen SLAg1 [Theileria lestoquardi]
Length = 723
Score = 32.7 bits (73), Expect = 2.8
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = -3
Query: 445 TVPEVNKRRIDEKLEVTKEELLFLLLRHDFKATLVYFSVI*YSLK--LS------FLLVL 290
T+P K+ + LE TK L+ FK+ ++ F + Y+ LS + L+
Sbjct: 432 TIPNKVKKEFELALEKTKASEKKNELQEAFKSIVIGFKIAYYATNDILSSITNSVYYLIK 491
Query: 289 LKHMGARYYFELPESMEMVPEVNERRIDEKLVVTK 185
LK+ G + E+ +SM+MVP +E+ ++ + K
Sbjct: 492 LKNFGDDFVTEVRKSMQMVP--HEKNLNGSSFIVK 524
>ref|NP_781931.1| DNA mismatch repair protein mutS [Clostridium tetani E88]
gi|28203426|gb|AAO35868.1| DNA mismatch repair protein
mutS [Clostridium tetani E88]
Length = 881
Score = 31.6 bits (70), Expect = 6.3
Identities = 19/74 (25%), Positives = 36/74 (47%)
Frame = -3
Query: 439 PEVNKRRIDEKLEVTKEELLFLLLRHDFKATLVYFSVI*YSLKLSFLLVLLKHMGARYYF 260
P +NK +ID++L +E +L + L D K L Y ++ + K++ A+
Sbjct: 306 PLINKEKIDKRLNAVEELVLNISLHEDLKDALKDI----YDIQRIVGKISSKNVNAKELL 361
Query: 259 ELPESMEMVPEVNE 218
L S+E +P + +
Sbjct: 362 SLKNSIEKLPYIKD 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,166,712
Number of Sequences: 1393205
Number of extensions: 7666026
Number of successful extensions: 19567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19545
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
