Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005633A_C01 KMC005633A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171871.1| helicase, putative; protein id: At1g03750.1 [Ar... 57 1e-07
ref|NP_778219.1| G protein-coupled receptor TGR5 [Bos taurus] gi... 31 5.8
dbj|BAA83048.2| KIAA1096 protein [Homo sapiens] 31 7.6
ref|XP_043678.8| similar to hypothetical protein [Homo sapiens] ... 31 7.6
dbj|BAA90997.1| unnamed protein product [Homo sapiens] 31 7.6
>ref|NP_171871.1| helicase, putative; protein id: At1g03750.1 [Arabidopsis thaliana]
gi|25406739|pir||H86167 hypothetical protein [imported] -
Arabidopsis thaliana gi|4204312|gb|AAD10693.1|
Hypothetical protein [Arabidopsis thaliana]
Length = 874
Score = 57.0 bits (136), Expect = 1e-07
Identities = 30/69 (43%), Positives = 45/69 (64%), Gaps = 2/69 (2%)
Frame = -3
Query: 448 SSAHRRKKP--DCVTKKQKLPLIDERKRTQYSLLAQFMGMGELAFSKWLLSASPLEREKV 275
+SA R+KK C ++ E+KR +Y +LA+F GM L FS+W+LSASP +REK+
Sbjct: 806 NSADRKKKKRKGCSEEEDMSSSNREQKREKYKMLAEFKGMEILEFSRWVLSASPFDREKL 865
Query: 274 LVDYKKKKK 248
L D+ ++ K
Sbjct: 866 LQDFLERVK 874
>ref|NP_778219.1| G protein-coupled receptor TGR5 [Bos taurus]
gi|27807551|dbj|BAC55234.1| G protein-coupled receptor
[Bos taurus]
Length = 329
Score = 31.2 bits (69), Expect = 5.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 336 MPINWA--RRLYWVLFLSSIKGSFCFLVTQSGFFLLWAEEMLGSLRP 470
+P+ W+ RR YW + +FCFL + L+ E + LRP
Sbjct: 71 LPVLWSQSRRGYWSCLFLYLAPNFCFLSLLANLLLVHGERYMAVLRP 117
>dbj|BAA83048.2| KIAA1096 protein [Homo sapiens]
Length = 1919
Score = 30.8 bits (68), Expect = 7.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 7/91 (7%)
Frame = -2
Query: 359 PPCPVYGHGRACI*QMVTISLSTGEGKSACRLQEEKENTSWLKSSSCGSQNKC*PSMYSY 180
P + G G + T S +T + + C+++ ++ TS L S+S SQ C PS+ +
Sbjct: 1334 PTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQ 1393
Query: 179 LQ-------SQNL*IRVTFVHMDV*SIFLLQ 108
Q SQ+ ++ +MD +F Q
Sbjct: 1394 QQQNPQVYVSQSAAAQIPAFYMDTSHLFNTQ 1424
>ref|XP_043678.8| similar to hypothetical protein [Homo sapiens]
gi|28872861|ref|NP_055987.1| HBxAg transactivated protein
2 [Homo sapiens] gi|5541863|emb|CAB51071.1| hypothetical
protein [Homo sapiens] gi|28629137|gb|AAO49478.1| HBxAg
transactivated protein 2 [Homo sapiens]
Length = 2701
Score = 30.8 bits (68), Expect = 7.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 7/91 (7%)
Frame = -2
Query: 359 PPCPVYGHGRACI*QMVTISLSTGEGKSACRLQEEKENTSWLKSSSCGSQNKC*PSMYSY 180
P + G G + T S +T + + C+++ ++ TS L S+S SQ C PS+ +
Sbjct: 2311 PTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQ 2370
Query: 179 LQ-------SQNL*IRVTFVHMDV*SIFLLQ 108
Q SQ+ ++ +MD +F Q
Sbjct: 2371 QQQNPQVYVSQSAAAQIPAFYMDTSHLFNTQ 2401
>dbj|BAA90997.1| unnamed protein product [Homo sapiens]
Length = 466
Score = 30.8 bits (68), Expect = 7.6
Identities = 24/91 (26%), Positives = 42/91 (45%), Gaps = 7/91 (7%)
Frame = -2
Query: 359 PPCPVYGHGRACI*QMVTISLSTGEGKSACRLQEEKENTSWLKSSSCGSQNKC*PSMYSY 180
P + G G + T S +T + + C+++ ++ TS L S+S SQ C PS+ +
Sbjct: 148 PTASLSGAGTYTTSSLSTKSTTTSDPPNICKVKPQQLQTSSLPSASHFSQLSCMPSLIAQ 207
Query: 179 LQ-------SQNL*IRVTFVHMDV*SIFLLQ 108
Q SQ+ ++ +MD +F Q
Sbjct: 208 QQQNPQVYVSQSAAAQIPAFYMDTSHLFNTQ 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,605,636
Number of Sequences: 1393205
Number of extensions: 8652680
Number of successful extensions: 19869
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19855
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
