Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005631A_C01 KMC005631A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172330.1| putative plastid RNA polymerase sigma-subunit; ... 284 7e-76
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI... 283 1e-75
gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana] 282 2e-75
emb|CAB83106.1| sigma factor 2 [Sinapis alba] 278 3e-74
gb|AAD17854.1| sigma factor SIG2A; ZmSIG2A [Zea mays] 170 1e-41
>ref|NP_172330.1| putative plastid RNA polymerase sigma-subunit; protein id:
At1g08540.1, supported by cDNA: gi_2353172, supported by
cDNA: gi_2398848, supported by cDNA: gi_2443356
[Arabidopsis thaliana] gi|7488389|pir||T00707
transcription initiation factor sigma homolog [imported]
- Arabidopsis thaliana gi|2443357|dbj|BAA22427.1| SigB
[Arabidopsis thaliana] gi|2597831|emb|CAA75584.1| sigma
factor [Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1|
plastid RNA polymerase sigma-subunit [Arabidopsis
thaliana] gi|5478446|dbj|BAA82449.1| sigma factor SigB
[Arabidopsis thaliana]
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
[Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2
[Arabidopsis thaliana]
Length = 572
Score = 284 bits (726), Expect = 7e-76
Identities = 141/172 (81%), Positives = 159/172 (91%)
Frame = -2
Query: 596 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 417
SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 458
Query: 416 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 237
K PRSL+QKIG+NQNLKPSEVIADPEA T+E+ LIK+FM++DL+KVLDSL REKQVIRW
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518
Query: 236 RFGMDDGRMKTLPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 81
RFGM+DGRMKTL EIGEM+GVSRER+R IES AFRKLKN+KRN HLQQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 283 bits (724), Expect = 1e-75
Identities = 141/172 (81%), Positives = 158/172 (90%)
Frame = -2
Query: 596 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 417
SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 458
Query: 416 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 237
K PRSL+QKIG+NQNLKPSEVIADPEA T E+ LIK+FM++DL+KVLDSL REKQVIRW
Sbjct: 459 KPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRW 518
Query: 236 RFGMDDGRMKTLPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 81
RFGM+DGRMKTL EIGEM+GVSRER+R IES AFRKLKN+KRN HLQQYLV+
Sbjct: 519 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
>gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 282 bits (722), Expect = 2e-75
Identities = 140/172 (81%), Positives = 159/172 (92%)
Frame = -2
Query: 596 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 417
SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+HP +EE+AEATGLSMKRL AVLL+P
Sbjct: 401 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSP 460
Query: 416 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 237
K PRSL++KIG+NQNLKPSEVIADPEA T+E+ LIK+FM++DL+KVLDSL REKQVIRW
Sbjct: 461 KPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRW 520
Query: 236 RFGMDDGRMKTLPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYLVS 81
RFGM+DGRMKTL EIGEM+GVSRER+R IES AFRKLKN+KRN HLQQYLV+
Sbjct: 521 RFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 572
>emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 278 bits (712), Expect = 3e-74
Identities = 139/176 (78%), Positives = 159/176 (89%)
Frame = -2
Query: 596 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 417
SLSDQSR IRLPFHM+EATYRVKEARKQLYSE G+ P +EEVAEATGLSMKRL AVLL+P
Sbjct: 399 SLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSP 458
Query: 416 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 237
K PRSL+QKIGIN NLKPSEVIADPEAET+E+ L+KQFM++DL+KVLDSL+ REKQVIRW
Sbjct: 459 KPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRW 518
Query: 236 RFGMDDGRMKTLPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYLVSHPSQ 69
RFGM+DGRMKTL EIGE +GVSRER+R I++ AFRKLKN+KRN HLQQYLV+ +
Sbjct: 519 RFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVAQTKE 574
>gb|AAD17854.1| sigma factor SIG2A; ZmSIG2A [Zea mays]
Length = 539
Score = 170 bits (430), Expect = 1e-41
Identities = 91/171 (53%), Positives = 124/171 (72%)
Frame = -2
Query: 596 SLSDQSRTIRLPFHMLEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLSAVLLTP 417
S+S+QS+ RLP HM+EA+YRVKE K+L + R P +EE+A TG+ +KR+ A + P
Sbjct: 365 SVSEQSQIFRLPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLP 424
Query: 416 KAPRSLEQKIGINQNLKPSEVIADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIRW 237
K SL+ KIG + ++ EV ADP AETAEE L + MKKD+ LD+L REKQV+
Sbjct: 425 KYSVSLDSKIG-STDMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVL 483
Query: 236 RFGMDDGRMKTLPEIGEMLGVSRERIRPIESCAFRKLKNQKRNQHLQQYLV 84
RFG++DGR++TL EIG ++GVSRERIR IES AFRKL+++K+ + L+ YLV
Sbjct: 484 RFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,059,769
Number of Sequences: 1393205
Number of extensions: 10866021
Number of successful extensions: 31561
Number of sequences better than 10.0: 714
Number of HSP's better than 10.0 without gapping: 30255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31321
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
