Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005630A_C01 KMC005630A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SM60|PGMU_PEA Phosphoglucomutase, cytoplasmic (Glucose phos... 137 1e-37
sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose ph... 130 1e-34
sp|Q9M4G4|PGMU_SOLTU Phosphoglucomutase, cytoplasmic (Glucose ph... 127 3e-34
ref|NP_177230.1| putative phosphoglucomutase; protein id: At1g70... 122 1e-33
ref|NP_173732.1| putative phosphoglucomutase; protein id: At1g23... 123 1e-33
>sp|Q9SM60|PGMU_PEA Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
gi|6272281|emb|CAB60127.1| cytosolic phosphoglucomutase
[Pisum sativum]
Length = 582
Score = 137 bits (344), Expect(2) = 1e-37
Identities = 67/76 (88%), Positives = 70/76 (91%)
Frame = -3
Query: 799 LSEVNEIVKGASSDVSNVVNGDEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSV 620
L EVNEI+KGASSDVS VV+GDEFEY DPVDGSISSHQGIRY FEDGSRLIFRLSGTGS
Sbjct: 471 LPEVNEIIKGASSDVSKVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSE 530
Query: 619 GATIRLYLEPYEKDPS 572
GATIRLY+E YEKDPS
Sbjct: 531 GATIRLYIEQYEKDPS 546
Score = 42.0 bits (97), Expect(2) = 1e-37
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -2
Query: 569 RLGDFLMKHLLLLWRVALKLSKMQEFTGRSAPTVIT 462
++G + L L ALKLSKM+EFTGRSAPTVIT
Sbjct: 547 KIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582
>sp|Q9ZSQ4|PGMU_POPTN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
gi|4234941|gb|AAD13031.1| cytosolic phosphoglucomutase
[Populus tremula x Populus tremuloides]
Length = 582
Score = 130 bits (327), Expect(2) = 1e-34
Identities = 63/76 (82%), Positives = 67/76 (87%)
Frame = -3
Query: 799 LSEVNEIVKGASSDVSNVVNGDEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSV 620
L+EVNEIV G SDVS VV+ DEFEYKDPVDGSIS HQGIRY FEDGSRL+FRLSGTGS
Sbjct: 471 LTEVNEIVSGIQSDVSKVVHADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSE 530
Query: 619 GATIRLYLEPYEKDPS 572
GATIRLY+E YEKDPS
Sbjct: 531 GATIRLYIEQYEKDPS 546
Score = 38.9 bits (89), Expect(2) = 1e-34
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -2
Query: 524 VALKLSKMQEFTGRSAPTVIT 462
VAL L KMQEFTGRSAPTVIT
Sbjct: 562 VALGLXKMQEFTGRSAPTVIT 582
>sp|Q9M4G4|PGMU_SOLTU Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
gi|8250624|emb|CAB93681.1| cytosolic phosphoglucomutase
[Solanum tuberosum]
Length = 583
Score = 127 bits (318), Expect(2) = 3e-34
Identities = 59/76 (77%), Positives = 67/76 (87%)
Frame = -3
Query: 799 LSEVNEIVKGASSDVSNVVNGDEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSV 620
+ EVN+++KG SDVSNVV+ DEFEYKDPVDGS+S HQGIRY FEDGSRL+FRLSGTGS
Sbjct: 472 IDEVNKLIKGIRSDVSNVVHADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSE 531
Query: 619 GATIRLYLEPYEKDPS 572
GATIRLY+E YEKD S
Sbjct: 532 GATIRLYIEQYEKDSS 547
Score = 40.8 bits (94), Expect(2) = 3e-34
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -2
Query: 569 RLGDFLMKHLLLLWRVALKLSKMQEFTGRSAPTVIT 462
++G + L L VALKLSKMQE+T RSAPTVIT
Sbjct: 548 KIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583
>ref|NP_177230.1| putative phosphoglucomutase; protein id: At1g70730.1, supported by
cDNA: gi_19699054 [Arabidopsis thaliana]
gi|12585324|sp|Q9SGC1|PGM2_ARATH Probable
phosphoglucomutase, cytoplasmic 2 (Glucose phosphomutase
2) (PGM 2) gi|25292703|pir||G96731 probable
phosphoglucomutase F5A18.9 [imported] - Arabidopsis
thaliana gi|12324763|gb|AAG52345.1|AC011663_24 putative
phosphoglucomutase; 31864-35570 [Arabidopsis thaliana]
gi|19699055|gb|AAL90895.1| At1g70730/F5A18_9
[Arabidopsis thaliana] gi|27363248|gb|AAO11543.1|
At1g70730/F5A18_9 [Arabidopsis thaliana]
Length = 585
Score = 122 bits (305), Expect(3) = 1e-33
Identities = 57/76 (75%), Positives = 65/76 (85%)
Frame = -3
Query: 799 LSEVNEIVKGASSDVSNVVNGDEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSV 620
L EVN+I+KG +V+NV + DEFEYKDPVDGS+S HQGIRY FEDGSRL+FRLSGTGS
Sbjct: 474 LPEVNKIIKGIHPEVANVASADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSE 533
Query: 619 GATIRLYLEPYEKDPS 572
GATIRLY+E YEKD S
Sbjct: 534 GATIRLYIEQYEKDAS 549
Score = 42.0 bits (97), Expect(3) = 1e-33
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = -2
Query: 524 VALKLSKMQEFTGRSAPTVIT 462
VALKLSKMQEFTGRS+PTVIT
Sbjct: 565 VALKLSKMQEFTGRSSPTVIT 585
Score = 21.9 bits (45), Expect(3) = 1e-33
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 570 QIGRLSHEALAPLVEGCIETFK 505
+IGR S +AL PLV+ ++ K
Sbjct: 550 KIGRDSQDALGPLVDVALKLSK 571
>ref|NP_173732.1| putative phosphoglucomutase; protein id: At1g23190.1, supported by
cDNA: gi_16649112, supported by cDNA: gi_20148520
[Arabidopsis thaliana] gi|16649113|gb|AAL24408.1|
phosphoglucomutase [Arabidopsis thaliana]
gi|20148521|gb|AAM10151.1| phosphoglucomutase
[Arabidopsis thaliana]
Length = 583
Score = 123 bits (309), Expect(3) = 1e-33
Identities = 59/76 (77%), Positives = 66/76 (86%)
Frame = -3
Query: 799 LSEVNEIVKGASSDVSNVVNGDEFEYKDPVDGSISSHQGIRYFFEDGSRLIFRLSGTGSV 620
+ EVN+IVKG SDV++V + DEFEYKDPVDGSIS HQGIRY FEDGSRL+FRLSGTGS
Sbjct: 472 IPEVNKIVKGIRSDVASVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSE 531
Query: 619 GATIRLYLEPYEKDPS 572
GATIRLY+E YEKD S
Sbjct: 532 GATIRLYIEQYEKDAS 547
Score = 40.8 bits (94), Expect(3) = 1e-33
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -2
Query: 524 VALKLSKMQEFTGRSAPTVIT 462
+ALKLSKM+EFTGRSAPTVIT
Sbjct: 563 LALKLSKMEEFTGRSAPTVIT 583
Score = 21.6 bits (44), Expect(3) = 1e-33
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 564 GRLSHEALAPLVEGCIETFK 505
GR S EAL+PLV+ ++ K
Sbjct: 550 GRESQEALSPLVDLALKLSK 569
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,380,221
Number of Sequences: 1393205
Number of extensions: 15575779
Number of successful extensions: 41238
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 39644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41230
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
