Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005628A_C01 KMC005628A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180441.1| histone H4; protein id: At2g28740.1, supported ... 196 9e-50
pir||HSWT4 histone H4 - wheat 196 9e-50
sp|P35057|H4_LYCES Histone H4 gi|421921|pir||S32769 histone H4 -... 195 2e-49
emb|CAB01913.1| Histone H4 homologue [Sesbania rostrata] 195 2e-49
gb|AAH19757.2| Similar to germinal histone H4 gene [Mus musculus] 195 2e-49
>ref|NP_180441.1| histone H4; protein id: At2g28740.1, supported by cDNA: 32642.,
supported by cDNA: gi_17380765 [Arabidopsis thaliana]
gi|15231283|ref|NP_190179.1| Histone H4 - like protein;
protein id: At3g45930.1, supported by cDNA: 22146.
[Arabidopsis thaliana] gi|15232318|ref|NP_190941.1|
histone H4-like protein; protein id: At3g53730.1,
supported by cDNA: 13571., supported by cDNA:
gi_20466417 [Arabidopsis thaliana]
gi|18390794|ref|NP_563793.1| histone H4; protein id:
At1g07660.1, supported by cDNA: 7539. [Arabidopsis
thaliana] gi|18390815|ref|NP_563797.1| histone H4;
protein id: At1g07820.1, supported by cDNA: 27686.
[Arabidopsis thaliana] gi|18424269|ref|NP_568911.1|
histone H4 - like protein; protein id: At5g59690.1,
supported by cDNA: 15418., supported by cDNA:
gi_13358243, supported by cDNA: gi_16209692 [Arabidopsis
thaliana] gi|18424305|ref|NP_568918.1| histone H4 - like
protein; protein id: At5g59970.1, supported by cDNA:
31173. [Arabidopsis thaliana]
gi|28202122|sp|P59258|H4_WHEAT Histone H4
gi|28202123|sp|P59259|H4_ARATH Histone H4
gi|70771|pir||HSZM4 histone H4 - maize
gi|81642|pir||S06904 histone H4 - Arabidopsis thaliana
gi|7428644|pir||HSPM4 histone H4 - garden pea
gi|25294278|pir||E84688 histone H4 - Arabidopsis
thaliana gi|21795|emb|CAA24924.1| histone H4 [Triticum
aestivum] gi|166740|gb|AAA32810.1| histone H4
gi|166742|gb|AAA32811.1| histone H4
gi|168499|gb|AAA33474.1| histone H4 (H4C13)
gi|168501|gb|AAA33475.1| histone H4
gi|168503|gb|AAA33476.1| histone H4
gi|498898|gb|AAA86948.1| histone H4 homolog
gi|1806285|emb|CAB01914.1| histone H4 homologue
[Sesbania rostrata] gi|3927823|gb|AAC79580.1| histone H4
[Arabidopsis thaliana] gi|6009915|dbj|BAA85120.1|
histone H4-like protein [Solanum melongena]
gi|6522611|emb|CAB62023.1| histone H4-like protein
[Arabidopsis thaliana] gi|7339494|emb|CAB82817.1|
Histone H4-like protein [Arabidopsis thaliana]
gi|7629993|emb|CAB88335.1| histone H4-like protein
[Arabidopsis thaliana]
gi|8439886|gb|AAF75072.1|AC007583_8 Identical to histone
H4 from Arabidopsis thaliana gi|S06904
gi|8439903|gb|AAF75089.1|AC007583_25 Identical to
histone H4 from Arabidopsis thaliana gi|S06904
gi|9757918|dbj|BAB08365.1| histone H4 [Arabidopsis
thaliana] gi|9758835|dbj|BAB09507.1| histone H4
[Arabidopsis thaliana]
gi|11762277|gb|AAG40410.1|AF325058_1 AT5g59690
[Arabidopsis thaliana]
gi|12039318|gb|AAG46106.1|AC073166_4 histone H4 [Oryza
sativa] gi|12248031|gb|AAG50107.1|AF334729_1 putative
histone H4 protein [Arabidopsis thaliana]
gi|13277212|emb|CAC34411.1| histone H4 [Flaveria
trinervia] gi|16209693|gb|AAL14404.1| AT5g59690/mth12_90
[Arabidopsis thaliana] gi|17065282|gb|AAL32795.1|
histone H4-like protein [Arabidopsis thaliana]
gi|17380766|gb|AAL36213.1| putative histone H4 protein
[Arabidopsis thaliana] gi|20160804|dbj|BAB89744.1|
putative histone H4 [Oryza sativa (japonica
cultivar-group)] gi|20198175|gb|AAM15445.1| histone H4
[Arabidopsis thaliana] gi|20260010|gb|AAM13352.1|
histone H4-like protein [Arabidopsis thaliana]
gi|20466418|gb|AAM20526.1| histone H4-like protein
[Arabidopsis thaliana] gi|21537385|gb|AAM61726.1|
histone H4-like protein [Arabidopsis thaliana]
gi|21553628|gb|AAM62721.1| histone H4-like protein
[Arabidopsis thaliana] gi|21554094|gb|AAM63175.1|
histone H4-like protein [Arabidopsis thaliana]
gi|21555353|gb|AAM63839.1| histone H4-like protein
[Arabidopsis thaliana] gi|21592313|gb|AAM64264.1|
histone H4-like protein [Arabidopsis thaliana]
gi|21592673|gb|AAM64622.1| histone H4-like protein
[Arabidopsis thaliana] gi|21592795|gb|AAM64744.1|
histone H4-like protein [Arabidopsis thaliana]
gi|21700843|gb|AAM70545.1| AT5g59690/mth12_90
[Arabidopsis thaliana] gi|22136354|gb|AAM91255.1|
histone H4-like protein [Arabidopsis thaliana]
gi|22165124|gb|AAM93740.1| histone H4 [Oryza sativa
(japonica cultivar-group)] gi|23296862|gb|AAN13189.1|
putative histone H4 protein [Arabidopsis thaliana]
gi|27452909|gb|AAO15293.1| Unknown protein [Oryza sativa
(japonica cultivar-group)] gi|28208264|dbj|BAC56852.1|
histone H4 [Silene latifolia] gi|28393088|gb|AAO41978.1|
putative histone H4 protein [Arabidopsis thaliana]
gi|28466803|gb|AAO44010.1| At1g07820 [Arabidopsis
thaliana] gi|28564804|dbj|BAC57734.1| histone H4 [Oryza
sativa (japonica cultivar-group)]
gi|28827318|gb|AAO50503.1| putative histone H4 protein
[Arabidopsis thaliana] gi|225838|prf||1314298A histone
H4
Length = 103
Score = 196 bits (499), Expect = 9e-50
Identities = 98/100 (98%), Positives = 100/100 (100%)
Frame = -2
Query: 481 RGKGGKGLGKGGAQRHRKVLRDHIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 302
RGKGGKGLGKGGA+RHRKVLRD+IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL
Sbjct: 4 RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 63
Query: 301 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 182
ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 64 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>pir||HSWT4 histone H4 - wheat
Length = 102
Score = 196 bits (499), Expect = 9e-50
Identities = 98/100 (98%), Positives = 100/100 (100%)
Frame = -2
Query: 481 RGKGGKGLGKGGAQRHRKVLRDHIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 302
RGKGGKGLGKGGA+RHRKVLRD+IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL
Sbjct: 3 RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 62
Query: 301 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 182
ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 63 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 102
>sp|P35057|H4_LYCES Histone H4 gi|421921|pir||S32769 histone H4 - tomato
gi|297150|emb|CAA48923.1| histone H4 [Lycopersicon
esculentum] gi|297152|emb|CAA48924.1| histone H4
[Lycopersicon esculentum] gi|2746721|gb|AAB94924.1|
histone H4 [Capsicum annuum]
Length = 103
Score = 195 bits (496), Expect = 2e-49
Identities = 97/100 (97%), Positives = 100/100 (100%)
Frame = -2
Query: 481 RGKGGKGLGKGGAQRHRKVLRDHIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 302
RGKGGKGLGKGGA+RHRKVLRD+IQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL
Sbjct: 4 RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 63
Query: 301 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 182
ENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 64 ENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>emb|CAB01913.1| Histone H4 homologue [Sesbania rostrata]
Length = 103
Score = 195 bits (496), Expect = 2e-49
Identities = 97/100 (97%), Positives = 100/100 (100%)
Frame = -2
Query: 481 RGKGGKGLGKGGAQRHRKVLRDHIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 302
RGKGGKGLGKGGA+RHRKVLRD+IQGITKPAIRRLA+RGGVKRISGLIYEETRGVLKIFL
Sbjct: 4 RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLAKRGGVKRISGLIYEETRGVLKIFL 63
Query: 301 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 182
ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 64 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
>gb|AAH19757.2| Similar to germinal histone H4 gene [Mus musculus]
Length = 112
Score = 195 bits (495), Expect = 2e-49
Identities = 96/100 (96%), Positives = 100/100 (100%)
Frame = -2
Query: 481 RGKGGKGLGKGGAQRHRKVLRDHIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL 302
RGKGGKGLGKGGA+RHRKVLRD+IQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FL
Sbjct: 13 RGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFL 72
Query: 301 ENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 182
ENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 73 ENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,823,273
Number of Sequences: 1393205
Number of extensions: 10265588
Number of successful extensions: 40249
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 36611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40095
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
