Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005625A_C01 KMC005625A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S28019 gene iojap protein - maize gi|22349|emb|CAA78772.1| ... 61 7e-09
ref|NP_566439.1| expressed protein; protein id: At3g12930.1, sup... 58 8e-08
gb|AAM65470.1| putative iojap protein [Arabidopsis thaliana] 58 8e-08
gb|ZP_00105881.1| hypothetical protein [Nostoc punctiforme] 37 0.15
ref|NP_488209.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 37 0.20
>pir||S28019 gene iojap protein - maize gi|22349|emb|CAA78772.1| putative iojap
protein [Zea mays]
Length = 228
Score = 61.2 bits (147), Expect = 7e-09
Identities = 28/34 (82%), Positives = 29/34 (84%)
Frame = -2
Query: 537 DVVVHILLPPQRAFYILEEFYGNATPVELPFANQ 436
DVVVHI LP QRAFY LEEFYGNATP+ELPF Q
Sbjct: 193 DVVVHIFLPQQRAFYNLEEFYGNATPIELPFDTQ 226
>ref|NP_566439.1| expressed protein; protein id: At3g12930.1, supported by cDNA:
39638. [Arabidopsis thaliana]
gi|15795122|dbj|BAB02500.1| IojAP protein-like
[Arabidopsis thaliana] gi|22655076|gb|AAM98129.1|
expressed protein [Arabidopsis thaliana]
gi|27311971|gb|AAO00951.1| expressed protein
[Arabidopsis thaliana]
Length = 238
Score = 57.8 bits (138), Expect = 8e-08
Identities = 24/37 (64%), Positives = 29/37 (77%)
Frame = -2
Query: 537 DVVVHILLPPQRAFYILEEFYGNATPVELPFANQPPP 427
DVV+H+ LPPQR FY LE+FYGNA +ELPF +Q P
Sbjct: 200 DVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQSQP 236
>gb|AAM65470.1| putative iojap protein [Arabidopsis thaliana]
Length = 238
Score = 57.8 bits (138), Expect = 8e-08
Identities = 24/37 (64%), Positives = 29/37 (77%)
Frame = -2
Query: 537 DVVVHILLPPQRAFYILEEFYGNATPVELPFANQPPP 427
DVV+H+ LPPQR FY LE+FYGNA +ELPF +Q P
Sbjct: 200 DVVIHLFLPPQRTFYNLEDFYGNAMQIELPFEDQSQP 236
>gb|ZP_00105881.1| hypothetical protein [Nostoc punctiforme]
Length = 152
Score = 37.0 bits (84), Expect = 0.15
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -2
Query: 537 DVVVHILLPPQRAFYILEEFYGNATPVELPFANQ 436
DV+VHI++P +R FY LE F+ +A + LP +++
Sbjct: 113 DVIVHIMMPKEREFYNLEAFWIHAERISLPESDE 146
>ref|NP_488209.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25302205|pir||AB2327
hypothetical protein alr4169 [imported] - Nostoc sp.
(strain PCC 7120) gi|17133304|dbj|BAB75868.1|
ORF_ID:alr4169~hypothetical protein [Nostoc sp. PCC
7120]
Length = 152
Score = 36.6 bits (83), Expect = 0.20
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = -2
Query: 537 DVVVHILLPPQRAFYILEEFYGNATPVELPFANQ 436
D++VHI++P +R FY LE F+ +A + LP +++
Sbjct: 113 DIIVHIMMPKEREFYNLEAFWVHAERIPLPKSDE 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,060,645
Number of Sequences: 1393205
Number of extensions: 10401045
Number of successful extensions: 22269
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22260
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
