Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005624A_C01 KMC005624A_c01
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO59435.1| putative developmental protein [Nicotiana bentham... 195 6e-49
ref|NP_565053.1| expressed protein; protein id: At1g73030.1, sup... 194 1e-48
gb|AAM61431.1| developmental protein, putative [Arabidopsis thal... 194 1e-48
ref|NP_173215.1| developmental protein, putative; protein id: At... 189 4e-47
pir||C86312 hypothetical protein F11A6.7 - Arabidopsis thaliana ... 186 2e-46
>gb|AAO59435.1| putative developmental protein [Nicotiana benthamiana]
Length = 203
Score = 195 bits (495), Expect = 6e-49
Identities = 99/112 (88%), Positives = 106/112 (94%)
Frame = -3
Query: 692 SKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGD 513
SKSMGNIVKSLES+LATGNLQKMSETMD FE+QFVNMEVQAEFMESSMAGSTSLSTPE
Sbjct: 92 SKSMGNIVKSLESSLATGNLQKMSETMDKFEQQFVNMEVQAEFMESSMAGSTSLSTPEDQ 151
Query: 512 VNNLMQQVADDYGLEVSVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG 357
VN+LM QVADDYGLEVSVGLPQAA HA+P K++EKVDEDDL+RRLAELKARG
Sbjct: 152 VNSLMHQVADDYGLEVSVGLPQAAGHAIPTKDSEKVDEDDLTRRLAELKARG 203
>ref|NP_565053.1| expressed protein; protein id: At1g73030.1, supported by cDNA:
119909., supported by cDNA: gi_16648962, supported by
cDNA: gi_20148688 [Arabidopsis thaliana]
gi|25406243|pir||G96755 developmental protein homolog
DG1118 [imported] - Arabidopsis thaliana
gi|5903092|gb|AAD55650.1|AC008017_23 Highly similar to
developmental protein DG1118 [Arabidopsis thaliana]
gi|16648963|gb|AAL24333.1| Highly similar to
developmental protein DG1118 [Arabidopsis thaliana]
gi|20148689|gb|AAM10235.1| similar to developmental
protein DG1118 [Arabidopsis thaliana]
Length = 203
Score = 194 bits (493), Expect = 1e-48
Identities = 99/112 (88%), Positives = 106/112 (94%)
Frame = -3
Query: 692 SKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGD 513
+KSM NIVKSLES+LATGNLQKMSETMDSFEKQFVNMEVQAEFME++MAGSTSLSTPEG+
Sbjct: 92 TKSMTNIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMENAMAGSTSLSTPEGE 151
Query: 512 VNNLMQQVADDYGLEVSVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG 357
VN+LMQQVADDYGLEVSVGLPQ A HA+P K EKVDEDDLSRRLAELKARG
Sbjct: 152 VNSLMQQVADDYGLEVSVGLPQPAGHAIPTKTEEKVDEDDLSRRLAELKARG 203
>gb|AAM61431.1| developmental protein, putative [Arabidopsis thaliana]
Length = 203
Score = 194 bits (493), Expect = 1e-48
Identities = 99/112 (88%), Positives = 106/112 (94%)
Frame = -3
Query: 692 SKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGD 513
+KSM NIVKSLES+LATGNLQKMSETMDSFEKQFVNMEVQAEFME++MAGSTSLSTPEG+
Sbjct: 92 TKSMTNIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMENAMAGSTSLSTPEGE 151
Query: 512 VNNLMQQVADDYGLEVSVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG 357
VN+LMQQVADDYGLEVSVGLPQ A HA+P K EKVDEDDLSRRLAELKARG
Sbjct: 152 VNSLMQQVADDYGLEVSVGLPQPAGHAIPTKTEEKVDEDDLSRRLAELKARG 203
>ref|NP_173215.1| developmental protein, putative; protein id: At1g17730.1, supported
by cDNA: 16054. [Arabidopsis thaliana]
gi|21553734|gb|AAM62827.1| developmental protein,
putative [Arabidopsis thaliana]
gi|26451738|dbj|BAC42964.1| unknown protein [Arabidopsis
thaliana]
Length = 203
Score = 189 bits (479), Expect = 4e-47
Identities = 95/112 (84%), Positives = 105/112 (92%)
Frame = -3
Query: 692 SKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGD 513
+KSM NIVKSLES+L TGNLQKMSETMDSFEKQFVNMEVQAEFM+++MAGSTSLSTPEG+
Sbjct: 92 TKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNAMAGSTSLSTPEGE 151
Query: 512 VNNLMQQVADDYGLEVSVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG 357
VN+LMQQVADDYGLEVSVGLPQ A HA+P K EKV+EDDL+RRLAELKARG
Sbjct: 152 VNSLMQQVADDYGLEVSVGLPQPAGHAIPTKTEEKVEEDDLTRRLAELKARG 203
>pir||C86312 hypothetical protein F11A6.7 - Arabidopsis thaliana
gi|9802746|gb|AAF99815.1|AC034257_7 Similar to
developmental protein [Arabidopsis thaliana]
Length = 222
Score = 186 bits (473), Expect = 2e-46
Identities = 94/111 (84%), Positives = 104/111 (93%)
Frame = -3
Query: 692 SKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGD 513
+KSM NIVKSLES+L TGNLQKMSETMDSFEKQFVNMEVQAEFM+++MAGSTSLSTPEG+
Sbjct: 92 TKSMTNIVKSLESSLTTGNLQKMSETMDSFEKQFVNMEVQAEFMDNAMAGSTSLSTPEGE 151
Query: 512 VNNLMQQVADDYGLEVSVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKAR 360
VN+LMQQVADDYGLEVSVGLPQ A HA+P K EKV+EDDL+RRLAELKAR
Sbjct: 152 VNSLMQQVADDYGLEVSVGLPQPAGHAIPTKTEEKVEEDDLTRRLAELKAR 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,632,945
Number of Sequences: 1393205
Number of extensions: 12823875
Number of successful extensions: 47897
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 43432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47342
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
