Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005623A_C01 KMC005623A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10552.1| nine-cis-epoxycarotenoid dioxygenase4 [Pisum sat... 203 1e-51
ref|NP_193652.1| 9-cis-epoxycarotenoid dioxygenase (neoxanthin c... 186 2e-46
pir||T17019 hypothetical protein - apple tree gi|2924325|emb|CAB... 172 3e-42
emb|CAD33262.1| zeaxanthin cleavage oxygenase [Crocus sativus] 164 1e-39
gb|AAM74248.1|AC074355_10 Putative neoxanthin cleavage-enzyme [O... 134 1e-30
>dbj|BAC10552.1| nine-cis-epoxycarotenoid dioxygenase4 [Pisum sativum]
Length = 574
Score = 203 bits (517), Expect = 1e-51
Identities = 97/127 (76%), Positives = 113/127 (88%)
Frame = -3
Query: 661 FGVINQRFLGRKSRFVYAAVGDPMPKISGVVKIDVVSGETVGCRMYGEGCYGGEPFFVSA 482
F VIN F+G+++RFVYAA+G+PMPKISGVVKIDV+ GE VGCRM+GEGCYGGEPFFV A
Sbjct: 449 FAVINSDFMGKRNRFVYAAIGNPMPKISGVVKIDVLKGEEVGCRMFGEGCYGGEPFFV-A 507
Query: 481 GEEVEEEDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHGLFVSDS 302
E EEDDGYLVSY+HDE KGESRFLVMDA+SPE ++VA VKLPRRVPYGFHGLFV +S
Sbjct: 508 REGGVEEDDGYLVSYMHDEKKGESRFLVMDAKSPEFDIVAEVKLPRRVPYGFHGLFVRES 567
Query: 301 ELRKVSL 281
++RK+SL
Sbjct: 568 DIRKLSL 574
>ref|NP_193652.1| 9-cis-epoxycarotenoid dioxygenase (neoxanthin cleavage
enzyme)(NC1)(NCED1), putative; protein id: At4g19170.1,
supported by cDNA: gi_15983766 [Arabidopsis thaliana]
gi|7487132|pir||T04438 hypothetical protein T18B16.140 -
Arabidopsis thaliana gi|2828292|emb|CAA16706.1|
neoxanthin cleavage enzyme-like protein [Arabidopsis
thaliana] gi|7268712|emb|CAB78919.1| neoxanthin cleavage
enzyme-like protein [Arabidopsis thaliana]
gi|15983767|gb|AAL10480.1| AT4g19170/T18B16_140
[Arabidopsis thaliana] gi|22531030|gb|AAM97019.1|
neoxanthin cleavage enzyme-like protein [Arabidopsis
thaliana]
Length = 595
Score = 186 bits (473), Expect = 2e-46
Identities = 93/131 (70%), Positives = 107/131 (80%), Gaps = 6/131 (4%)
Frame = -3
Query: 661 FGVINQRFLGRKSRFVYAAVGDPMPKISGVVKIDVVSGE----TVGCRMYGEGCYGGEPF 494
F VIN FLGR SR+VYAA+GDPMPKISGVVK+DV G+ TV RMYG GCYGGEPF
Sbjct: 465 FAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTVARRMYGSGCYGGEPF 524
Query: 493 FVSA--GEEVEEEDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHG 320
FV+ G EEDDGY+V+YVHDE GES+FLVMDA+SPELE+VAAV+LPRRVPYGFHG
Sbjct: 525 FVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHG 584
Query: 319 LFVSDSELRKV 287
LFV +S+L K+
Sbjct: 585 LFVKESDLNKL 595
>pir||T17019 hypothetical protein - apple tree gi|2924325|emb|CAB07784.1|
hypothetical protein [Malus x domestica]
Length = 446
Score = 172 bits (437), Expect = 3e-42
Identities = 86/131 (65%), Positives = 105/131 (79%), Gaps = 6/131 (4%)
Frame = -3
Query: 661 FGVINQRFLGRKSRFVYAAVGDPMPKISGVVKIDVVSGETVGC----RMYGEGCYGGEPF 494
F VIN +LGRK+++VYAA GDPMPKISGVVK+DV + E C RM+G GCYGGEPF
Sbjct: 316 FAVINPAYLGRKNKYVYAAEGDPMPKISGVVKLDVSNVEHKECIVASRMFGPGCYGGEPF 375
Query: 493 FVSAGEEVEE--EDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHG 320
FV+ E E ED+G+LVSYVHDE GESRFLVMDA+SP+L++VAAV++PRRVPYGFHG
Sbjct: 376 FVAREPENPEADEDNGFLVSYVHDEKAGESRFLVMDAKSPQLDIVAAVRMPRRVPYGFHG 435
Query: 319 LFVSDSELRKV 287
LFV +S+L +
Sbjct: 436 LFVRESDLNNL 446
>emb|CAD33262.1| zeaxanthin cleavage oxygenase [Crocus sativus]
Length = 369
Score = 164 bits (414), Expect = 1e-39
Identities = 83/128 (64%), Positives = 100/128 (77%), Gaps = 6/128 (4%)
Frame = -3
Query: 661 FGVINQRFLGRKSRFVYAAVGDPMPKISGVVKIDVV---SGETVGCRM-YGEGCYGGEPF 494
FGVI++ + GRKSR+ Y VGDPMPKI GVVK+D GE V R +G GC+GGEPF
Sbjct: 238 FGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVDFELAGRGECVVARREFGVGCFGGEPF 297
Query: 493 FVSAGEEVE--EEDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHG 320
FV A + EEDDGY+VSY+HDEGKGES F+VMDA+SPELE++A V LPRRVPYGFHG
Sbjct: 298 FVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHG 357
Query: 319 LFVSDSEL 296
LFV+++EL
Sbjct: 358 LFVTEAEL 365
>gb|AAM74248.1|AC074355_10 Putative neoxanthin cleavage-enzyme [Oryza sativa (japonica
cultivar-group)]
Length = 251
Score = 134 bits (336), Expect = 1e-30
Identities = 67/127 (52%), Positives = 92/127 (71%), Gaps = 5/127 (3%)
Frame = -3
Query: 661 FGVINQRFLGRKSRFVYAAVGDPMPKISGVVKID--VVSGE--TVGCRMYGEGCYGGEPF 494
FGVI+Q ++GR +R+ Y V P+P+ SG+ K+D +V + TV R +G GC+ GEPF
Sbjct: 120 FGVIHQGYVGRYNRYGYFGVSAPLPRFSGIRKLDFAMVGADDCTVARRDFGPGCFVGEPF 179
Query: 493 FVSAGEEVE-EEDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHGL 317
FV + + + ED+GY+V Y H E GES+F+VMDA SPELE+VAAV+LP RVPYGFHG
Sbjct: 180 FVPSNDNGDGNEDNGYVVCYTHKEDTGESQFVVMDAMSPELEIVAAVQLPARVPYGFHGR 239
Query: 316 FVSDSEL 296
F++ +EL
Sbjct: 240 FITQAEL 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 695,384,758
Number of Sequences: 1393205
Number of extensions: 21021818
Number of successful extensions: 436929
Number of sequences better than 10.0: 12863
Number of HSP's better than 10.0 without gapping: 114513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252766
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
