Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005622A_C01 KMC005622A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase... 276 2e-73
ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase... 238 3e-62
dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana] 238 3e-62
ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase... 218 5e-56
gb|AAL73068.1|AC090873_14 Putative alpha-mannosidase [Oryza sati... 199 2e-50
>ref|NP_189306.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At3g26720.1, supported by cDNA: gi_14517402 [Arabidopsis
thaliana] gi|1888357|emb|CAA66821.1| alpha-mannosidase
[Arabidopsis thaliana] gi|1890154|emb|CAA72432.1|
alpha-mannosidase precursor [Arabidopsis thaliana]
gi|11994305|dbj|BAB01735.1| alpha-mannosidase
[Arabidopsis thaliana] gi|14517403|gb|AAK62592.1|
AT3g26720/MLJ15_12 [Arabidopsis thaliana]
gi|21360397|gb|AAM47314.1| AT3g26720/MLJ15_12
[Arabidopsis thaliana]
Length = 1019
Score = 276 bits (705), Expect = 2e-73
Identities = 131/158 (82%), Positives = 144/158 (90%), Gaps = 2/158 (1%)
Frame = +1
Query: 79 VFLAAIWVA--ESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGGNNSIRG 252
+ LAAI + SEYIEYNT RIVP+KINVHLVPHSHDDVGWLKTVDQYYVG NNSIRG
Sbjct: 10 LILAAIVIGGVTSEYIEYNTKPRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRG 69
Query: 253 ACVQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKELVNSGQLEFINGG 432
ACVQNVLDSVI+SLL+D NRKFIYVEMAFFQRWWRQQS A+K+KVK+LV+SGQLEFINGG
Sbjct: 70 ACVQNVLDSVIASLLDDENRKFIYVEMAFFQRWWRQQSNAKKVKVKKLVDSGQLEFINGG 129
Query: 433 MCMHDEATPHYIDLIDQTSLGHQFMKEE*GKTPRVGWQ 546
MCMHDEATPHYID+IDQT+LGHQF+K E G+ PRVGWQ
Sbjct: 130 MCMHDEATPHYIDMIDQTTLGHQFIKTEFGQVPRVGWQ 167
>ref|NP_196902.2| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g13980.1, supported by cDNA: gi_20466475 [Arabidopsis
thaliana] gi|20466476|gb|AAM20555.1| alpha-mannosidase
[Arabidopsis thaliana] gi|23198186|gb|AAN15620.1|
alpha-mannosidase [Arabidopsis thaliana]
Length = 1024
Score = 238 bits (607), Expect = 3e-62
Identities = 110/156 (70%), Positives = 128/156 (81%)
Frame = +1
Query: 79 VFLAAIWVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGGNNSIRGAC 258
V L I + ES Y+ YNT+ IVP K+NVH+VPHSHDDVGWLKTVDQYYVG NNSI+ AC
Sbjct: 11 VLLLGISLVESRYMVYNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVAC 70
Query: 259 VQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKELVNSGQLEFINGGMC 438
VQNVLDS++ +LL D NRKFIYVE AFFQRWW +QS+ K VKEL++SGQLE INGGMC
Sbjct: 71 VQNVLDSIVPALLADKNRKFIYVEQAFFQRWWNEQSEEIKRIVKELIHSGQLELINGGMC 130
Query: 439 MHDEATPHYIDLIDQTSLGHQFMKEE*GKTPRVGWQ 546
MHDEA PHYID+IDQT+LGH+F+ E TPR+GWQ
Sbjct: 131 MHDEAAPHYIDMIDQTTLGHRFIIREFNVTPRIGWQ 166
>dbj|BAB11126.1| alpha-mannosidase [Arabidopsis thaliana]
Length = 1030
Score = 238 bits (607), Expect = 3e-62
Identities = 110/156 (70%), Positives = 128/156 (81%)
Frame = +1
Query: 79 VFLAAIWVAESEYIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYYVGGNNSIRGAC 258
V L I + ES Y+ YNT+ IVP K+NVH+VPHSHDDVGWLKTVDQYYVG NNSI+ AC
Sbjct: 11 VLLLGISLVESRYMVYNTSHTIVPGKLNVHVVPHSHDDVGWLKTVDQYYVGSNNSIQVAC 70
Query: 259 VQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKELVNSGQLEFINGGMC 438
VQNVLDS++ +LL D NRKFIYVE AFFQRWW +QS+ K VKEL++SGQLE INGGMC
Sbjct: 71 VQNVLDSIVPALLADKNRKFIYVEQAFFQRWWNEQSEEIKRIVKELIHSGQLELINGGMC 130
Query: 439 MHDEATPHYIDLIDQTSLGHQFMKEE*GKTPRVGWQ 546
MHDEA PHYID+IDQT+LGH+F+ E TPR+GWQ
Sbjct: 131 MHDEAAPHYIDMIDQTTLGHRFIIREFNVTPRIGWQ 166
>ref|NP_201416.1| glycosyl hydrolase family 38 (alpha-mannosidase); protein id:
At5g66150.1 [Arabidopsis thaliana]
gi|10177130|dbj|BAB10420.1| alpha-mannosidase
[Arabidopsis thaliana]
Length = 1047
Score = 218 bits (554), Expect = 5e-56
Identities = 100/170 (58%), Positives = 128/170 (74%), Gaps = 4/170 (2%)
Frame = +1
Query: 49 TMANAAVLFAVFLAAIWVAESE----YIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVD 216
++ ++ VFL + + ES Y++Y T ++VP K+NVHLVPHSHDDVGWLKTVD
Sbjct: 7 SLLKGSLCVIVFLLLLSLVESVKGGGYVKYGTEAKVVPGKLNVHLVPHSHDDVGWLKTVD 66
Query: 217 QYYVGGNNSIRGACVQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKEL 396
QYYVG NN I+ ACV+NVLDSV+ SLL D NRKF++ EMAFF RWW +QS R+ +V+ L
Sbjct: 67 QYYVGSNNRIQNACVRNVLDSVVDSLLRDPNRKFVFAEMAFFTRWWEEQSPERQEQVRRL 126
Query: 397 VNSGQLEFINGGMCMHDEATPHYIDLIDQTSLGHQFMKEE*GKTPRVGWQ 546
V SGQLEF+NGG M+DEAT HYID+IDQT+ GH+F+K++ TPR WQ
Sbjct: 127 VKSGQLEFVNGGWAMNDEATCHYIDMIDQTTKGHRFIKQQFNTTPRAAWQ 176
>gb|AAL73068.1|AC090873_14 Putative alpha-mannosidase [Oryza sativa]
gi|19919970|gb|AAM08418.1|AC112513_4 Putative
alpha-mannosidase [Oryza sativa]
Length = 640
Score = 199 bits (505), Expect = 2e-50
Identities = 97/178 (54%), Positives = 126/178 (70%), Gaps = 13/178 (7%)
Frame = +1
Query: 52 MANAAVLFAVFLAAIWVAESE--YIEYNTTQRIVPDKINVHLVPHSHDDVGWLKTVDQYY 225
MA+++ V +A + +AE+ + YNT+ V K+NVHLVPHSHDDVGWLKT+DQY+
Sbjct: 1 MASSSSALVVVVAVLALAEAAVAFSGYNTSAGAVAGKLNVHLVPHSHDDVGWLKTIDQYF 60
Query: 226 VGGNNSIRGACVQNVLDSVISSLLEDTNRKFIYVEMAFFQRWWRQQSKARKIKVKELVNS 405
VG NNSI+GACV N LDSV+ +L+ D RKF++ E AFFQRWW ++S + V +LV+S
Sbjct: 61 VGTNNSIQGACVMNTLDSVVDALILDPARKFVFAEQAFFQRWWAEKSPKIQAIVHKLVDS 120
Query: 406 GQLEFI-----------NGGMCMHDEATPHYIDLIDQTSLGHQFMKEE*GKTPRVGWQ 546
GQLEFI NGG CMHDEA HYID+IDQT+LGH+ +K++ K PR GWQ
Sbjct: 121 GQLEFISLRKFGNFKFRNGGWCMHDEAAVHYIDMIDQTTLGHRVIKKQFNKIPRAGWQ 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,681,951
Number of Sequences: 1393205
Number of extensions: 10764616
Number of successful extensions: 30828
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 29506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30766
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
